PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.7G149700.1.p | ||||||||
Common Name | PRUPE_ppa011343mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 215aa MW: 24771.8 Da PI: 6.9051 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.1 | 1.8e-19 | 59 | 112 | 4 | 57 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++++t+eq++ Le F +++++ e++ +LA++lgL+ rqV vWFqNrRa++k+ Prupe.7G149700.1.p 59 KRKLTAEQVNLLELNFGNEHKLESEKKDRLASELGLDPRQVAVWFQNRRARWKN 112 5689************************************************95 PP | |||||||
2 | HD-ZIP_I/II | 119 | 2.5e-38 | 58 | 149 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 kkr+l++eqv+lLE +F +e+kLe+e+K +la+eLgl+prqvavWFqnrRAR+k+k+lE++y+ Lk+++d+ ++en++Le+e+++L+e+++ Prupe.7G149700.1.p 58 KKRKLTAEQVNLLELNFGNEHKLESEKKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSNLKKEHDSTVSENRKLESEMSKLKEQIS 148 9***************************************************************************************998 PP HD-ZIP_I/II 93 e 93 e Prupe.7G149700.1.p 149 E 149 6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 2.1E-17 | 56 | 117 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 6.84E-18 | 57 | 122 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.293 | 58 | 113 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.83E-15 | 58 | 114 | No hit | No description |
Pfam | PF00046 | 1.1E-16 | 59 | 112 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-20 | 60 | 120 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.8E-5 | 84 | 93 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 88 | 111 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.8E-5 | 93 | 109 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MTTKTNHQVV EEDDHMLLIS HLYPSDVYTQ IVPQQGASKP KRRRKKSKSG EAGGAGLKKR 60 KLTAEQVNLL ELNFGNEHKL ESEKKDRLAS ELGLDPRQVA VWFQNRRARW KNKKLEEEYS 120 NLKKEHDSTV SENRKLESEM SKLKEQISEA EKEIRRLSER VDHGGSSNSP SSSLSMDAID 180 PPFLGEFGVE EYDDVFYMPQ NNYIHGMEWM NLYM* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 41 | 59 | RRRKKSKSGEAGGAGLKKR |
2 | 43 | 60 | RKKSKSGEAGGAGLKKRK |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, flowers and siliques. {ECO:0000269|PubMed:16055682}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00473 | DAP | Transfer from AT4G36740 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.7G149700.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007204731.1 | 1e-158 | homeobox-leucine zipper protein ATHB-40 | ||||
Swissprot | O23208 | 2e-76 | ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40 | ||||
TrEMBL | M5WGL9 | 1e-157 | M5WGL9_PRUPE; Uncharacterized protein | ||||
STRING | EMJ05930 | 1e-158 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4789 | 32 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36740.1 | 3e-66 | homeobox protein 40 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.7G149700.1.p |
Entrez Gene | 18769821 |
Publications ? help Back to Top | |||
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