PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.7G144200.1.p
Common NamePRUPE_ppa009270mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 313aa    MW: 35698.3 Da    PI: 8.2816
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.7G144200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.82.2e-141096197
                        EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                  B3  1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92
                        ffk+l   + ++s+ l +p  f  ++ g+++++s    l  +   +W+v++  +k  ++++++kGWkeFv+++gLk  +f++F++ g+s+f  
  Prupe.7G144200.1.p 10 FFKAL--VHDFSSQ-LEIPPAFYVHFaGEVPRRS----LLRTPAGTWNVNV--EKVNDGFFFQKGWKEFVHDHGLKLCEFLIFRYAGNSKF-- 91
                        67777..6666665.9*******88876666654....55566679*****..99999*****************************9999.. PP

                        EEEEE CS
                  B3 93 vvkvf 97
                         v v+
  Prupe.7G144200.1.p 92 DVDVY 96
                        55554 PP
2B364.22e-20219309298
                         EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                  B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                         f + ++  +  +grlv+pk+f +++ gkk   k ++l+d s r+W vk+i r++s+r  l++GW +Fv++  Lk+gD++vF+l++r+++ +
  Prupe.7G144200.1.p 219 FRAIMRQAYVDKGRLVIPKSFQTSCIGKK---KYVRLQD-SMRRWIVKCISRRNSSR--LSAGWYQFVRDRALKVGDVCVFELIDRNDAVM 303
                         55666666677789********9**5553...4699999.99*******99999988..9**************************9*99* PP

                         EEEEE- CS
                  B3  93 vvkvfr 98 
                         +v++fr
  Prupe.7G144200.1.p 304 KVSIFR 309
                         ***998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.6E-194101IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-206101IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.491799IPR003340B3 DNA binding domain
CDDcd100171.06E-15896No hitNo description
PfamPF023622.5E-121093IPR003340B3 DNA binding domain
SMARTSM010192.4E-111099IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.0E-22211309IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-19213309IPR015300DNA-binding pseudobarrel domain
CDDcd100171.42E-18217309No hitNo description
PROSITE profilePS5086313.676218311IPR003340B3 DNA binding domain
PfamPF023624.1E-18219309IPR003340B3 DNA binding domain
SMARTSM010191.8E-14219311IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MARRRRKPSF FKALVHDFSS QLEIPPAFYV HFAGEVPRRS LLRTPAGTWN VNVEKVNDGF  60
FFQKGWKEFV HDHGLKLCEF LIFRYAGNSK FDVDVYGRNG CAKEFVMAVS KNDRSLEEEH  120
DNTIHGTQNV DGQGFGSADG TTTSQATCAI KNEVIDVDSD TSMDVDEPDT QEDQLNEDSE  180
IGLPRELGST EHFYSRTQME NPSEALEAAK KFSSKHPFFR AIMRQAYVDK GRLVIPKSFQ  240
TSCIGKKKYV RLQDSMRRWI VKCISRRNSS RLSAGWYQFV RDRALKVGDV CVFELIDRND  300
AVMKVSIFRC NS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A3e-2020031130143B3 domain-containing transcription factor VRN1
4i1k_B3e-2020031130143B3 domain-containing transcription factor VRN1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.7G144200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020423347.10.0putative B3 domain-containing protein Os03g0621600
TrEMBLA0A251NBG20.0A0A251NBG2_PRUPE; Uncharacterized protein
STRINGXP_008241585.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16060710
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.15e-33B3 family protein