PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.7G143900.4.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 545aa    MW: 62336.4 Da    PI: 9.3138
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.7G143900.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.11.8e-14251145100
                         -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                  B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                         ++p+ ++    l++pkkf++++g +   s  + l+ ++g +W+++l  r+  g+ ++ kGW eF +   L+   ++vF+++g+s+f  ++ 
  Prupe.7G143900.4.p  25 MIPKGTSGDMKLSIPKKFLRKYGDD--LSNPVLLKLPNGSKWNIEL--RRWEGEAWFDKGWPEFSEFYSLEHCHSLVFRYEGNSKF--HIC 109
                         556666677889**********988..66679999***********..88888899**************************9999..*** PP

                         EE-SS CS
                  B3  96 vfrks 100
                         +f+ks
  Prupe.7G143900.4.p 110 IFDKS 114
                         *9985 PP
2B3407e-13245332899
                         -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                  B3   8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                         s+ + ++ ++l  +f   +g+ +++s  ++l d+ gr W v++    k++   +++GW eFv  n+L+ +D++vF l+++++  + v +fr
  Prupe.7G143900.4.p 245 SYIG-RHPMWLTSDFSIFMGHLSKNSANVILWDLGGRAWVVEF--IAKPR-AKFQSGWHEFVCGNNLNINDVCVFVLIDDTRLVFEVVIFR 331
                         4444.44588888887777666678889***************..55554.469************************9999888888887 PP

                         S CS
                  B3  99 k 99 
                         +
  Prupe.7G143900.4.p 332 A 332
                         5 PP
3B352.21.1e-16445532698
                         ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEE CS
                  B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvk 95 
                         +++ +   + l lp kf++eh ++   + +++l+ ++ r+W v+l  +k+++++ l+  W +Fv++n+L++ D++vF+l+++ +   ++v 
  Prupe.7G143900.4.p 445 IHPTNICGCYLALPAKFVKEHLNQA--HDKVILRVSDERTWHVNL--CKYGRAFRLQ-RWMRFVRENHLEVDDVCVFELINNiKPL-FNVA 529
                         5667777899***********6553..348***************..**********.9********************9986655.6777 PP

                         EE- CS
                  B3  96 vfr 98 
                         +fr
  Prupe.7G143900.4.p 530 LFR 532
                         776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.0E-2215114IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-2115114IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.95721114IPR003340B3 DNA binding domain
SMARTSM010194.2E-1322114IPR003340B3 DNA binding domain
PfamPF023625.1E-1225113IPR003340B3 DNA binding domain
CDDcd100175.62E-1625112No hitNo description
Gene3DG3DSA:2.40.330.101.5E-16230332IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.63E-16231331IPR015300DNA-binding pseudobarrel domain
CDDcd100177.37E-13236331No hitNo description
SMARTSM010198.3E-6238333IPR003340B3 DNA binding domain
PfamPF023628.2E-11243332IPR003340B3 DNA binding domain
PROSITE profilePS5086310.532272333IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.9E-21433534IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-20434533IPR015300DNA-binding pseudobarrel domain
CDDcd100171.43E-15439532No hitNo description
PROSITE profilePS5086310.743440534IPR003340B3 DNA binding domain
SMARTSM010193.5E-11441534IPR003340B3 DNA binding domain
PfamPF023623.0E-13446533IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 545 aa     Download sequence    Send to blast
MTSLRREIGN PTKRFSSSTP HFLMMIPKGT SGDMKLSIPK KFLRKYGDDL SNPVLLKLPN  60
GSKWNIELRR WEGEAWFDKG WPEFSEFYSL EHCHSLVFRY EGNSKFHICI FDKSFVEIEY  120
PLTMPDRKET DADDDSSDES DDHSDDASLE ILDKFPPCPR KSKEKSSLPC PRPHKKKRTS  180
SSGNVDYPAK RHDRGTSSTP RFLKQTQVVR GRMHPLTTSG KALALQRAKA YKSDKPSFIV  240
PMHHSYIGRH PMWLTSDFSI FMGHLSKNSA NVILWDLGGR AWVVEFIAKP RAKFQSGWHE  300
FVCGNNLNIN DVCVFVLIDD TRLVFEVVIF RAVEAANCTL LPDVDGEETD EDDDSVDSLD  360
ELPPCSKTRK ISPIAPQPHK KNRTCSTSKA KNIEHVCGSS KTRKFVIRRP EVPRMMHPVA  420
ASGKDRALLR ANAYKSKYPS FTAAIHPTNI CGCYLALPAK FVKEHLNQAH DKVILRVSDE  480
RTWHVNLCKY GRAFRLQRWM RFVRENHLEV DDVCVFELIN NIKPLFNVAL FRAKQEKLKE  540
QPDG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.7G143900.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020423346.10.0B3 domain-containing transcription factor VRN1
TrEMBLA0A251NBH40.0A0A251NBH4_PRUPE; Uncharacterized protein
STRINGEMJ042500.0(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-33B3 family protein