PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.7G143900.2.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 541aa    MW: 61910.8 Da    PI: 9.2194
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.7G143900.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.19.6e-113611020100
                         HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-SS CS
                  B3  20 kkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrks 100
                          kf++++g +   s  + l+ ++g +W+++l  r+  g+ ++ kGW eF +   L+   ++vF+++g+s+f  ++ +f+ks
  Prupe.7G143900.2.p  36 LKFLRKYGDD--LSNPVLLKLPNGSKWNIEL--RRWEGEAWFDKGWPEFSEFYSLEHCHSLVFRYEGNSKF--HICIFDKS 110
                         4788888877..666799999**********..88888899**************************9999..****9985 PP
2B3406.9e-13241328899
                         -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                  B3   8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                         s+ + ++ ++l  +f   +g+ +++s  ++l d+ gr W v++    k++   +++GW eFv  n+L+ +D++vF l+++++  + v +fr
  Prupe.7G143900.2.p 241 SYIG-RHPMWLTSDFSIFMGHLSKNSANVILWDLGGRAWVVEF--IAKPR-AKFQSGWHEFVCGNNLNINDVCVFVLIDDTRLVFEVVIFR 327
                         4444.44588888887777666678889***************..55554.469************************9999888888887 PP

                         S CS
                  B3  99 k 99 
                         +
  Prupe.7G143900.2.p 328 A 328
                         5 PP
3B352.21.1e-16441528698
                         ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEE CS
                  B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvk 95 
                         +++ +   + l lp kf++eh ++   + +++l+ ++ r+W v+l  +k+++++ l+  W +Fv++n+L++ D++vF+l+++ +   ++v 
  Prupe.7G143900.2.p 441 IHPTNICGCYLALPAKFVKEHLNQA--HDKVILRVSDERTWHVNL--CKYGRAFRLQ-RWMRFVRENHLEVDDVCVFELINNiKPL-FNVA 525
                         5667777899***********6553..348***************..**********.9********************9986655.6777 PP

                         EE- CS
                  B3  96 vfr 98 
                         +fr
  Prupe.7G143900.2.p 526 LFR 528
                         776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.879110IPR003340B3 DNA binding domain
SMARTSM010192.0E-615110IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.9E-1715110IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.06E-1716110IPR015300DNA-binding pseudobarrel domain
CDDcd100177.84E-1416108No hitNo description
PfamPF023624.5E-836109IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.5E-16226328IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.63E-16227327IPR015300DNA-binding pseudobarrel domain
CDDcd100177.41E-13232327No hitNo description
SMARTSM010198.3E-6234329IPR003340B3 DNA binding domain
PfamPF023628.1E-11239328IPR003340B3 DNA binding domain
PROSITE profilePS5086310.532268329IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.8E-21429530IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-20430529IPR015300DNA-binding pseudobarrel domain
CDDcd100171.44E-15435528No hitNo description
PROSITE profilePS5086310.743436530IPR003340B3 DNA binding domain
SMARTSM010193.5E-11437530IPR003340B3 DNA binding domain
PfamPF023623.0E-13442529IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 541 aa     Download sequence    Send to blast
MTSLRREIGN PTKRFSSSTP HFLMMIPKGT SGDMKLKFLR KYGDDLSNPV LLKLPNGSKW  60
NIELRRWEGE AWFDKGWPEF SEFYSLEHCH SLVFRYEGNS KFHICIFDKS FVEIEYPLTM  120
PDRKETDADD DSSDESDDHS DDASLEILDK FPPCPRKSKE KSSLPCPRPH KKKRTSSSGN  180
VDYPAKRHDR GTSSTPRFLK QTQVVRGRMH PLTTSGKALA LQRAKAYKSD KPSFIVPMHH  240
SYIGRHPMWL TSDFSIFMGH LSKNSANVIL WDLGGRAWVV EFIAKPRAKF QSGWHEFVCG  300
NNLNINDVCV FVLIDDTRLV FEVVIFRAVE AANCTLLPDV DGEETDEDDD SVDSLDELPP  360
CSKTRKISPI APQPHKKNRT CSTSKAKNIE HVCGSSKTRK FVIRRPEVPR MMHPVAASGK  420
DRALLRANAY KSKYPSFTAA IHPTNICGCY LALPAKFVKE HLNQAHDKVI LRVSDERTWH  480
VNLCKYGRAF RLQRWMRFVR ENHLEVDDVC VFELINNIKP LFNVALFRAK QEKLKEQPDG  540
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.7G143900.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020423346.10.0B3 domain-containing transcription factor VRN1
TrEMBLA0A251NBF10.0A0A251NBF1_PRUPE; Uncharacterized protein
STRINGEMJ042500.0(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.13e-30B3 family protein