PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.7G143900.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 554aa    MW: 63261.3 Da    PI: 9.0388
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.7G143900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.41.3e-13381239100
                         HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                  B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                         d +  +  ++pkkf++++g +   s  + l+ ++g +W+++l  r+  g+ ++ kGW eF +   L+   ++vF+++g+s+f  ++ +f+k
  Prupe.7G143900.1.p  38 DDTFCAGQSIPKKFLRKYGDD--LSNPVLLKLPNGSKWNIEL--RRWEGEAWFDKGWPEFSEFYSLEHCHSLVFRYEGNSKF--HICIFDK 122
                         455555689*********988..66679999***********..88888899**************************9999..****998 PP

                         S CS
                  B3 100 s 100
                         s
  Prupe.7G143900.1.p 123 S 123
                         5 PP
2B3407.2e-13254341899
                         -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                  B3   8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                         s+ + ++ ++l  +f   +g+ +++s  ++l d+ gr W v++    k++   +++GW eFv  n+L+ +D++vF l+++++  + v +fr
  Prupe.7G143900.1.p 254 SYIG-RHPMWLTSDFSIFMGHLSKNSANVILWDLGGRAWVVEF--IAKPR-AKFQSGWHEFVCGNNLNINDVCVFVLIDDTRLVFEVVIFR 340
                         4444.44588888887777666678889***************..55554.469************************9999888888887 PP

                         S CS
                  B3  99 k 99 
                         +
  Prupe.7G143900.1.p 341 A 341
                         5 PP
3B352.11.2e-16454541698
                         ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEE CS
                  B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvk 95 
                         +++ +   + l lp kf++eh ++   + +++l+ ++ r+W v+l  +k+++++ l+  W +Fv++n+L++ D++vF+l+++ +   ++v 
  Prupe.7G143900.1.p 454 IHPTNICGCYLALPAKFVKEHLNQA--HDKVILRVSDERTWHVNL--CKYGRAFRLQ-RWMRFVRENHLEVDDVCVFELINNiKPL-FNVA 538
                         5667777899***********6553..348***************..**********.9********************9986555.6777 PP

                         EE- CS
                  B3  96 vfr 98 
                         +fr
  Prupe.7G143900.1.p 539 LFR 541
                         776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.1E-2015123IPR015300DNA-binding pseudobarrel domain
SMARTSM010196.7E-1030123IPR003340B3 DNA binding domain
CDDcd100172.82E-1634121No hitNo description
PfamPF023625.1E-1137122IPR003340B3 DNA binding domain
SuperFamilySSF1019366.47E-1943123IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.9747123IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.5E-16239341IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.02E-16240340IPR015300DNA-binding pseudobarrel domain
CDDcd100176.85E-13245340No hitNo description
SMARTSM010198.3E-6247342IPR003340B3 DNA binding domain
PfamPF023628.4E-11252341IPR003340B3 DNA binding domain
PROSITE profilePS5086310.532281342IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.9E-21442543IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-20443542IPR015300DNA-binding pseudobarrel domain
CDDcd100171.26E-15448541No hitNo description
PROSITE profilePS5086310.743449543IPR003340B3 DNA binding domain
SMARTSM010193.5E-11450543IPR003340B3 DNA binding domain
PfamPF023623.1E-13455542IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 554 aa     Download sequence    Send to blast
MTSLRREIGN PTKRFSSSTP HFLMMIPKGT SGDMKLSDDT FCAGQSIPKK FLRKYGDDLS  60
NPVLLKLPNG SKWNIELRRW EGEAWFDKGW PEFSEFYSLE HCHSLVFRYE GNSKFHICIF  120
DKSFVEIEYP LTMPDRKETD ADDDSSDESD DHSDDASLEI LDKFPPCPRK SKEKSSLPCP  180
RPHKKKRTSS SGNVDYPAKR HDRGTSSTPR FLKQTQVVRG RMHPLTTSGK ALALQRAKAY  240
KSDKPSFIVP MHHSYIGRHP MWLTSDFSIF MGHLSKNSAN VILWDLGGRA WVVEFIAKPR  300
AKFQSGWHEF VCGNNLNIND VCVFVLIDDT RLVFEVVIFR AVEAANCTLL PDVDGEETDE  360
DDDSVDSLDE LPPCSKTRKI SPIAPQPHKK NRTCSTSKAK NIEHVCGSSK TRKFVIRRPE  420
VPRMMHPVAA SGKDRALLRA NAYKSKYPSF TAAIHPTNIC GCYLALPAKF VKEHLNQAHD  480
KVILRVSDER TWHVNLCKYG RAFRLQRWMR FVRENHLEVD DVCVFELINN IKPLFNVALF  540
RAKQEKLKEQ PDG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.7G143900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020423346.10.0B3 domain-containing transcription factor VRN1
TrEMBLA0A251NEF10.0A0A251NEF1_PRUPE; Uncharacterized protein
STRINGEMJ042500.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14896412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.14e-31B3 family protein