PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.7G143800.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 368aa    MW: 41830.4 Da    PI: 7.9819
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.7G143800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3604.1e-1996181188
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.S CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.s 88 
                         f+ vl+++++  ++ l+lp kf +eh +   ++  ++l  ++gr+W vkl  + +++ ++l+ GW  Fv++n+L++gD++vF+l+++ +
  Prupe.7G143800.1.p  96 FCWVLMHHSYIHRSYLRLPAKFSKEHINW--THDNIVLHVPNGRTWPVKLGQDARGRVIYLS-GWTTFVRDNNLEVGDVCVFELINDvK 181
                         56689999999999************433..3347***************666666667777.********************998533 PP
2B352.96.7e-17261344187
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr 87 
                         ffk+ +++ +   + + l+ +f++e+ ++  +s+  +l+ ++gr+W+vkl  ++++++ + +++GW +Fv++n L  gD++vF l+++
  Prupe.7G143800.1.p 261 FFKIAMHATYIHGHHMNLSSSFVKENLNQ--TSTYAILRVSDGRTWSVKL--DQYGDArTRFQGGWMDFVRENSLVIGDVCVFVLVNN 344
                         8999999999999*************655..567899*************..887777799**********************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.6E-2289192IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.08E-2490191IPR015300DNA-binding pseudobarrel domain
PfamPF023623.2E-1796181IPR003340B3 DNA binding domain
SMARTSM010196.8E-1696187IPR003340B3 DNA binding domain
PROSITE profilePS5086314.55196192IPR003340B3 DNA binding domain
CDDcd100176.23E-2199190No hitNo description
Gene3DG3DSA:2.40.330.101.1E-20254353IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.69E-21255355IPR015300DNA-binding pseudobarrel domain
CDDcd100176.38E-17261355No hitNo description
PROSITE profilePS5086313.592261357IPR003340B3 DNA binding domain
PfamPF023626.4E-14261344IPR003340B3 DNA binding domain
SMARTSM010195.2E-11261357IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MEETYEDDGF IETVDDYPSC PKTRKKSPIE PQPHKKSRTC SIRKAESKIK DVCGASRTRK  60
FLVRGTEVPR RIDPVEATGK DIALQRAKAF KSEYPFCWVL MHHSYIHRSY LRLPAKFSKE  120
HINWTHDNIV LHVPNGRTWP VKLGQDARGR VIYLSGWTTF VRDNNLEVGD VCVFELINDV  180
KPLFDVVLFC ATKAANCTLS PADDDSGYDS GDDSGDESDD NSIEILDDFP PVPRKTREKP  240
PHISLERAVE RANSFASKYP FFKIAMHATY IHGHHMNLSS SFVKENLNQT STYAILRVSD  300
GRTWSVKLDQ YGDARTRFQG GWMDFVRENS LVIGDVCVFV LVNNIKPLFD VAFYRTKSKA  360
AHCTLNN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1232238PRKTREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.7G143800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020424407.10.0B3 domain-containing protein Os11g0197600 isoform X4
TrEMBLA0A251NBE50.0A0A251NBE5_PRUPE; Uncharacterized protein
STRINGEMJ032251e-168(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14896412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31640.12e-14B3 family protein