PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.7G143700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | B3 | ||||||||
Protein Properties | Length: 341aa MW: 38883.6 Da PI: 10.1214 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 45.9 | 1e-14 | 25 | 113 | 5 | 99 |
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 ++p+ +++ l++p+kf+ ++g + s + l+ +sg +W+++l r+ +g ++ kGW+eF + L+ ++vF+++g+s+f +v Prupe.7G143700.1.p 25 MIPKGASRGIKLRIPNKFLMKCGDD--LSNPVFLNVPSGSKWKMEL--RRWDGDAWFDKGWSEFFEFYSLDNCHSLVFRYEGNSKF--NVC 109 566677777889**********988..6667***************..88888899**************************9999..999 PP EE-S CS B3 96 vfrk 99 +f++ Prupe.7G143700.1.p 110 IFDQ 113 9987 PP | |||||||
2 | B3 | 48.8 | 1.3e-15 | 230 | 313 | 3 | 88 |
EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.S CS B3 3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.s 88 v + s + ++lp +f++eh ++ + +l + r W vkl +++++ r+ +++GW F ++n+L+ gD++vF+l+++ + Prupe.7G143700.1.p 230 MVSMGSTNIDGYHMSLPAEFVKEHFNQVHD--NAILCVSGERAWPVKLGHWGRG-RIRFQSGWGTFLRDNHLEIGDVCVFELISNiK 313 55566666677779**********655444..577888899*******888885.899***********************997533 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.8E-22 | 15 | 114 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.18E-20 | 15 | 114 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.53E-14 | 20 | 112 | No hit | No description |
PROSITE profile | PS50863 | 12.182 | 21 | 114 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 6.4E-10 | 22 | 114 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.7E-12 | 25 | 113 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.7E-23 | 221 | 321 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.67E-23 | 222 | 322 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.34E-17 | 227 | 321 | No hit | No description |
PROSITE profile | PS50863 | 12.534 | 228 | 324 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.1E-13 | 228 | 313 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.1E-8 | 229 | 322 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 341 aa Download sequence Send to blast |
MTSLRREIDN PTKRFSSTTP YFFMMIPKGA SRGIKLRIPN KFLMKCGDDL SNPVFLNVPS 60 GSKWKMELRR WDGDAWFDKG WSEFFEFYSL DNCHSLVFRY EGNSKFNVCI FDQSFKQIDY 120 ALKMPKMKET NSDDSGDVTE ILDKSLPRPR KSREKSPLQC LRPHKKARTS SRAGKVDFYA 180 KRHGGGKSIT ARFPKRTEPI LGSPHPSTTS EKAIALQRAK AFKSDNPFFM VSMGSTNIDG 240 YHMSLPAEFV KEHFNQVHDN AILCVSGERA WPVKLGHWGR GRIRFQSGWG TFLRDNHLEI 300 GDVCVFELIS NIKPLFDVVF FHATEAPNCT LSPGKLLTNF * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 148 | 154 | PRKSREK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.7G143700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020424404.1 | 0.0 | B3 domain-containing protein Os03g0620500 isoform X1 | ||||
Refseq | XP_020424406.1 | 0.0 | B3 domain-containing protein LOC_Os12g40080 isoform X3 | ||||
TrEMBL | A0A251NBE8 | 0.0 | A0A251NBE8_PRUPE; Uncharacterized protein | ||||
STRING | EMJ03225 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF98 | 34 | 369 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 5e-39 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.7G143700.1.p |