PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.7G143500.1.p
Common NamePRUPE_ppa018806mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 358aa    MW: 40607.2 Da    PI: 7.9122
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.7G143500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.52.8e-1419109399
                         EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                  B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                         k+    d++k+ r+ +p kf+ ++g+    s  + l+ ++g +We++l  r++ ++ +++ kGW eF k   L+ g  +vF ++g+s+f  
  Prupe.7G143500.1.p  19 KII-LDDTSKNIRIKIPMKFVMKYGEH--LSSPVHLKLPNGAEWEIEL--RRCNNGgVWFDKGWPEFSKFCSLDYGNWLVFGYEGNSNF-- 102
                         444.47889999************855..66679999***********..55555559***************************9999.. PP

                         EEEEE-S CS
                  B3  93 vvkvfrk 99 
                         +v +f++
  Prupe.7G143500.1.p 103 HVLIFDR 109
                         *****98 PP
2B355.97.6e-18264356398
                         EE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                  B3   3 kvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                         +v +++++   g l+lp +fa+++ ++    ++t tl+  + rsW v+li + k ++  l++GW  F+ +n L+ gD+++F+l++r++  l
  Prupe.7G143500.1.p 264 TVVMQPSYIPYGPLTLPIRFARSFvKLR---KQTATLQ-VRERSWPVNLIGWTKESSAKLSGGWPAFATENCLRRGDVCTFELIERNDIVL 350
                         6677888888999***********5444...3355544.477********9**********************************99999* PP

                         EEEEE- CS
                  B3  93 vvkvfr 98 
                         +v++fr
  Prupe.7G143500.1.p 351 KVHIFR 356
                         ****98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-2010110IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.24E-2111109IPR015300DNA-binding pseudobarrel domain
CDDcd100173.28E-1715108No hitNo description
PROSITE profilePS5086313.1416110IPR003340B3 DNA binding domain
SMARTSM010191.1E-1117110IPR003340B3 DNA binding domain
PfamPF023623.1E-1119109IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-21256356IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-20260356IPR015300DNA-binding pseudobarrel domain
CDDcd100173.56E-21261356No hitNo description
PROSITE profilePS5086312.731262357IPR003340B3 DNA binding domain
SMARTSM010191.6E-12263357IPR003340B3 DNA binding domain
PfamPF023621.2E-16263357IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MASLHDTPTS SAPIPHFFKI ILDDTSKNIR IKIPMKFVMK YGEHLSSPVH LKLPNGAEWE  60
IELRRCNNGG VWFDKGWPEF SKFCSLDYGN WLVFGYEGNS NFHVLIFDRT STEVEYAITK  120
PEMEETDYEE EDDNSVEILD GFPPCPRKAR EKSPLPCPQP HKKMRTCGKA ECNINFRPTK  180
TQTSLRNKAS DSSRSEMKKE DESDDDSVET LDAFPSCPKT RDKSPLAPSE VKDRVGRMHA  240
STTCGKSIAL QRAIAFESVS PSFTVVMQPS YIPYGPLTLP IRFARSFVKL RKQTATLQVR  300
ERSWPVNLIG WTKESSAKLS GGWPAFATEN CLRRGDVCTF ELIERNDIVL KVHIFRN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A3e-1624935635141B3 domain-containing transcription factor VRN1
4i1k_B3e-1624935635141B3 domain-containing transcription factor VRN1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.7G143500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007202985.10.0B3 domain-containing transcription factor VRN1
TrEMBLM5VS900.0M5VS90_PRUPE; Uncharacterized protein
STRINGEMJ041840.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-21B3 family protein