PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.7G143300.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 353aa    MW: 40170.1 Da    PI: 6.516
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.7G143300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.96.3e-12241081099
                         HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
                  B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                         vl+++ l +p + ++++g     + t+ l+ +++++W ++l  +k+ g+++l++GW++F++   L  g +++F+++g+ s f   v++f +
  Prupe.7G143300.1.p  24 VLSKDVLKFPESVVTKYGDC--LGDTVFLKVPNSEVWPIEL--TKRNGQVWLQQGWSNFADFYSLAFGYVLLFSYEGNhSHF--QVRIFMR 108
                         5778889999999*999755..6679***************..9********************************998888..8888865 PP
2B338.71.8e-121602401499
                         T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
                  B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                         g l +p   + ++        t  +e ++g  W ++   ++++++++l++GW eF+k+  L++g f+vF++ g+ s f   +++frk
  Prupe.7G143300.1.p 160 GKLEIPIIAVHTYRDYM--ADTAYFEVPDGSIWPIEW--TRRDREIWLGRGWPEFAKSYSLEDGCFLVFSYAGKcSHF--QLRIFRK 240
                         45566666665553332..23899*************..********************************9966666..9999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.55E-1715106IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.74315109IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.2E-1816107IPR015300DNA-binding pseudobarrel domain
CDDcd100171.07E-1418106No hitNo description
SMARTSM010192.0E-920109IPR003340B3 DNA binding domain
PfamPF023628.9E-1024108IPR003340B3 DNA binding domain
SuperFamilySSF1019364.9E-17145241IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-15145241IPR015300DNA-binding pseudobarrel domain
CDDcd100174.51E-13146239No hitNo description
PROSITE profilePS5086310.362147241IPR003340B3 DNA binding domain
SMARTSM010191.1E-8148241IPR003340B3 DNA binding domain
PfamPF023624.2E-10158241IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MGSSSRHGKG LAFPVDSRSF FKIVLSKDVL KFPESVVTKY GDCLGDTVFL KVPNSEVWPI  60
ELTKRNGQVW LQQGWSNFAD FYSLAFGYVL LFSYEGNHSH FQVRIFMRSP LETDYFGSSV  120
KEEDNLNGEM DYSNSPESPA SLMNAPSFFK IVLGRTLQDG KLEIPIIAVH TYRDYMADTA  180
YFEVPDGSIW PIEWTRRDRE IWLGRGWPEF AKSYSLEDGC FLVFSYAGKC SHFQLRIFRK  240
NTLEMEYNSS SDDTEGNSNT SRDQTEGEKR TRGGDGGKTA SHKSSGVDLR TVKLESLKGR  300
AFAKASSFKY DNPFTVISMQ PSYVLNHLSI SPSFCHETYP FRWRMQCDPT DF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.7G143300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020424409.10.0B3 domain-containing protein Os12g0591400 isoform X1
TrEMBLA0A251NBE20.0A0A251NBE2_PRUPE; Uncharacterized protein
STRINGXP_008241865.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2306834
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-17B3 family protein