PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.7G143100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | B3 | ||||||||
Protein Properties | Length: 254aa MW: 29040.4 Da PI: 10.1027 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 39 | 1.4e-12 | 13 | 104 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 ffk+ + +++ + l + kf+ e+ g s + l+ +sg +W+++l r+ +g+++l kGW +F k L+ g +vF ++g+s+ Prupe.7G143100.1.p 13 FFKIILDNSSRDR-KLGILEKFVMEYvdG----LSNPVYLKLPSGSEWKIEL--RRWDGEVWLVKGWPGFSKFYSLDLGHWLVFGYEGNSK 96 6777744444444.499******999643....4456***************..999999****************************999 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 f +v +f+ Prupe.7G143100.1.p 97 F--RVCIFDG 104 9..9999985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 5.5E-20 | 6 | 104 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.3E-21 | 6 | 104 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.05E-15 | 11 | 103 | No hit | No description |
PROSITE profile | PS50863 | 11.378 | 12 | 105 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.3E-11 | 13 | 105 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.4E-9 | 13 | 104 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 8.36 | 179 | 254 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.1E-5 | 188 | 254 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.34E-5 | 191 | 254 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MACPTFSPTT PHFFKIILDN SSRDRKLGIL EKFVMEYVDG LSNPVYLKLP SGSEWKIELR 60 RWDGEVWLVK GWPGFSKFYS LDLGHWLVFG YEGNSKFRVC IFDGNSDENS VEMFDFPPCQ 120 RKTREKSTLS CPWPHKKCRR VQVVKQKSTP TYKMGRHDFL TKKGGGGTSG NRTGKATALD 180 RANALKSQNP SSFIWLPSKF HKLHPINHSC EVILQVLNGR TWSVDLNCGF NGRIWPAKCQ 240 VETQARICGG WRAF |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.7G143100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028951045.1 | 2e-78 | B3 domain-containing transcription factor VRN1-like | ||||
TrEMBL | A0A251NBG1 | 0.0 | A0A251NBG1_PRUPE; Uncharacterized protein (Fragment) | ||||
STRING | EMJ04637 | 1e-170 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF98 | 34 | 369 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 2e-19 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.7G143100.1.p |