PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.7G128800.1.p
Common NamePRUPE_ppa008732mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 322aa    MW: 36200.5 Da    PI: 8.4531
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.7G128800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.51.1e-161462148
                        TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                        +g+W++eEd +l+++++++G+g +W + +++ g++R++k+c++rw++yl
  Prupe.7G128800.1.p 14 KGPWSPEEDAKLKEYIEKYGTGgNWIALPQKAGLRRCGKSCRLRWLNYL 62
                        79*********************************************97 PP
2Myb_DNA-binding41.92.4e-1369111246
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         g ++ eEd ++ ++++  G++ W+ Ia+ ++ gRt++++k++w++
  Prupe.7G128800.1.p  69 GEFSDEEDRIICNLFTNIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                         789******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.518962IPR017930Myb domain
SuperFamilySSF466891.27E-2711109IPR009057Homeodomain-like
SMARTSM007175.5E-131364IPR001005SANT/Myb domain
PfamPF002497.5E-161462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.5E-251569IPR009057Homeodomain-like
CDDcd001674.98E-91662No hitNo description
PROSITE profilePS5129421.87463117IPR017930Myb domain
SMARTSM007172.2E-1167115IPR001005SANT/Myb domain
PfamPF002495.1E-1169111IPR001005SANT/Myb domain
CDDcd001672.70E-770113No hitNo description
Gene3DG3DSA:1.10.10.601.4E-2370117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDAKLKEYIE KYGTGGNWIA LPQKAGLRRC GKSCRLRWLN  60
YLRPNIKHGE FSDEEDRIIC NLFTNIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLMGL  120
NILPSQIKSH SGTFSSLLHL QASLSSSSPS SYRGSNNSTA YYAQTRSFSS ALEPISFSPS  180
LLSRSSTNAA SVLHQVHQER FVGRAMQHNY QVKDNILMFG GEASCSSSDG SCSNQISQCR  240
DREYEYNYNF FNGGEGHQKI MLPDGLNGWR SEKQNGNGIW EDQAPLDYGL EEIKQLISST  300
SSCNNFLFDE NKTEEKAMMY Y*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-26141177108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.7G128800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ0744721e-114DQ074472.1 Malus x domestica MYB24 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007202240.10.0transcription factor RAX2
TrEMBLM5VQA20.0M5VQA2_PRUPE; Uncharacterized protein
STRINGEMJ034390.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.18e-78myb domain protein 36