PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.7G120600.1.p | ||||||||
Common Name | PRUPE_ppa004154mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | Trihelix | ||||||||
Protein Properties | Length: 528aa MW: 57098.9 Da PI: 6.8721 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 58.9 | 1.3e-18 | 147 | 233 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+++ + +L++a++++ ++l+rg+l++ +Weev++ + r ++s qCk+k +nl+kryk ++++++++ s s++p+f+++e Prupe.7G120600.1.p 147 EWSDSAISCLLDAYTDKFTQLNRGNLRGRDWEEVAAIVseRCDRQRKSVDQCKNKVDNLKKRYKLERQRMNNG-GVSASHWPWFKKME 233 5*************************************544456677**********************9998.566679*******8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 3.3E-21 | 145 | 235 | No hit | No description |
Gene3D | G3DSA:3.40.1160.10 | 9.9E-73 | 277 | 520 | IPR001048 | Aspartate/glutamate/uridylate kinase |
Hamap | MF_01220_B | 33.931 | 286 | 521 | IPR015963 | Uridylate kinase, bacteria |
SuperFamily | SSF53633 | 7.46E-58 | 287 | 520 | IPR001048 | Aspartate/glutamate/uridylate kinase |
CDD | cd04254 | 3.57E-124 | 289 | 521 | No hit | No description |
Pfam | PF00696 | 3.5E-25 | 290 | 500 | IPR001048 | Aspartate/glutamate/uridylate kinase |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006221 | Biological Process | pyrimidine nucleotide biosynthetic process | ||||
GO:0046939 | Biological Process | nucleotide phosphorylation | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0033862 | Molecular Function | UMP kinase activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 528 aa Download sequence Send to blast |
MASCDDDFSI LGDESNTTHH SHLPHAPSSH QLHQPYAPPH RFATRTTPVH APPAQPILSD 60 KVNAVEDQAE AGDDYDDASA AAFCSNPFES GTDQNDVVAG ASEKRKEHSD ELSDGGGGGS 120 GSAPYSYKRS KPSSTAAIGE YRKDREEWSD SAISCLLDAY TDKFTQLNRG NLRGRDWEEV 180 AAIVSERCDR QRKSVDQCKN KVDNLKKRYK LERQRMNNGG VSASHWPWFK KMENIVGNSL 240 PGKAISDEDK GVSSPGTTPR QSKSRNAMAI ISPVSQMNKV KSAPSIKWRR VVFKISGAAL 300 AGAAPNNVDS KLAMLIAREV ALACHNGVEV AIVVGGRNFF CGDAWVTATG LDRSTAYQIG 360 MMATVMNSVL LQSALEKMGV QTRVQTAFSM QEVAEPYSRQ RAIRHLEKGR VVIFAGIGAG 420 TGNPLFSTDT AAALRALEIH AEAVLKGTNV DGVYDCNSQD NNFTFEHISF RDVVTRGATS 480 MDSMALTFCE ENRIPVVVFN LLEPGNISKA LCGEQVGTLI DQAGRIS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ek5_A | 1e-61 | 286 | 520 | 7 | 239 | Uridylate kinase |
3ek5_B | 1e-61 | 286 | 520 | 7 | 239 | Uridylate kinase |
3ek5_C | 1e-61 | 286 | 520 | 7 | 239 | Uridylate kinase |
3ek5_D | 1e-61 | 286 | 520 | 7 | 239 | Uridylate kinase |
3ek5_E | 1e-61 | 286 | 520 | 7 | 239 | Uridylate kinase |
3ek5_F | 1e-61 | 286 | 520 | 7 | 239 | Uridylate kinase |
3ek6_A | 1e-61 | 286 | 520 | 7 | 239 | Uridylate kinase |
3ek6_B | 1e-61 | 286 | 520 | 7 | 239 | Uridylate kinase |
3ek6_C | 1e-61 | 286 | 520 | 7 | 239 | Uridylate kinase |
3ek6_D | 1e-61 | 286 | 520 | 7 | 239 | Uridylate kinase |
3ek6_E | 1e-61 | 286 | 520 | 7 | 239 | Uridylate kinase |
3ek6_F | 1e-61 | 286 | 520 | 7 | 239 | Uridylate kinase |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00340 | DAP | Transfer from AT3G10030 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.7G120600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020423621.1 | 0.0 | uncharacterized protein LOC18771263 isoform X1 | ||||
TrEMBL | A0A251NAG3 | 0.0 | A0A251NAG3_PRUPE; Uncharacterized protein | ||||
STRING | XP_008241324.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4062 | 32 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10030.1 | 0.0 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.7G120600.1.p |
Entrez Gene | 18771263 |