PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.7G115900.1.p | ||||||||
Common Name | PRUPE_ppa015643mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | ERF | ||||||||
Protein Properties | Length: 202aa MW: 22481.2 Da PI: 4.6906 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 44.7 | 3.3e-14 | 44 | 93 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 ykGVr+ + g+Wv+e+r p k+ r++lg+f +++Aa+a++ a+++l+g Prupe.7G115900.1.p 44 IYKGVRQ--RCGKWVCELRQP---DqKKSRIWLGTFTCPDMAARAYDVAALALKG 93 69***86..47******9998...3357************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.5E-9 | 43 | 93 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.98E-26 | 43 | 102 | No hit | No description |
PROSITE profile | PS51032 | 19.44 | 44 | 101 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.8E-26 | 44 | 103 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.5E-27 | 44 | 107 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.62E-17 | 44 | 103 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.0E-6 | 45 | 56 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.0E-6 | 83 | 103 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MTDFTDDASS SSSNRVSAQA HLQSVEFKKR KAGRKKFNET RHPIYKGVRQ RCGKWVCELR 60 QPDQKKSRIW LGTFTCPDMA ARAYDVAALA LKGKSAALNF PHEASTLPRI ASTCSVKDLQ 120 CAAAEAAEGF FEVEVKSSGL EEKEEEEVVY LDEEELFNMP GLIDSLAEGL ILTPPAMQKG 180 FNWNDFDDDM ENAVDFSLWS D* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 4e-15 | 42 | 103 | 12 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Mostly expressed in developing seeds and apices. {ECO:0000269|PubMed:17136305}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}. | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. {ECO:0000269|PubMed:17136305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.7G115900.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By calcium ion, methyl-jasmonate (MeJA), cold, drought, and high salinity stress. {ECO:0000269|PubMed:17136305}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007204774.1 | 1e-149 | dehydration-responsive element-binding protein 1F | ||||
Swissprot | A2WZI4 | 3e-49 | DRE1F_ORYSI; Dehydration-responsive element-binding protein 1F | ||||
Swissprot | Q8S9Z5 | 3e-49 | DRE1F_ORYSJ; Dehydration-responsive element-binding protein 1F | ||||
TrEMBL | M5W9P6 | 1e-148 | M5W9P6_PRUPE; Uncharacterized protein | ||||
STRING | EMJ05973 | 1e-149 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF243 | 33 | 224 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25480.1 | 6e-26 | dehydration response element B1A |
Link Out ? help Back to Top | |
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Phytozome | Prupe.7G115900.1.p |
Entrez Gene | 18771464 |
Publications ? help Back to Top | |||
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