PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.7G100600.1.p
Common NamePRUPE_ppa019539mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 374aa    MW: 41660.2 Da    PI: 6.7234
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.7G100600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3106.61.3e-331082091100
                         EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                         f+k ltpsdv+k++rlv+pk++ae++    gg+  ++  l++edesg+sW+++++y+++s++yvltkGW+++vk+++L++gD+v+F++ ++
  Prupe.7G100600.1.p 108 FEKPLTPSDVGKLNRLVIPKQHAEKYfplgGGD--SGLLLSFEDESGKSWRFRYSYWNSSQSYVLTKGWSRYVKEKRLDAGDVVLFERRRS 196
                         99***************************7666..6679************************************************8877 PP

                         SEE..EEEEE-SS CS
                  B3  88 sefelvvkvfrks 100
                         ++ +l+++++r+s
  Prupe.7G100600.1.p 197 HTDRLFIGWRRRS 209
                         9999******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.6E-42100218IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.57E-32104209IPR015300DNA-binding pseudobarrel domain
CDDcd100171.47E-28106198No hitNo description
PROSITE profilePS5086314.861108209IPR003340B3 DNA binding domain
SMARTSM010194.3E-28108209IPR003340B3 DNA binding domain
PfamPF023624.2E-30108209IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010073Biological Processmeristem maintenance
GO:0010358Biological Processleaf shaping
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0080167Biological Processresponse to karrikin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MSINHFSSDH PETQWWPNTA HQQQQDPSRP HFLPQFYQDT HHHNYQAWLN SQEQPTPMSP  60
TPPTPTTLNF NLNQNDAESD HANQLQHHLL LQSSPPLDDH DEENEPMFEK PLTPSDVGKL  120
NRLVIPKQHA EKYFPLGGGD SGLLLSFEDE SGKSWRFRYS YWNSSQSYVL TKGWSRYVKE  180
KRLDAGDVVL FERRRSHTDR LFIGWRRRSA AATPSAHDSG PGATQVNGGA GESSGSGSAG  240
GWTRMFYSAP HHNSSDGGSS YPAHQYHNHS AAPYPPDCLH AAGSGVQNMS QTTSSVGSSK  300
ILRLFGVNLE CQQQADHESE PSTPDGSSSL SMSSSQGPTP HHHLYPRAAY DYAADQRDFS  360
FSRDGNPMRN RRG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A1e-461032083113B3 domain-containing transcription factor NGA1
5os9_B1e-461032083113B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.7G100600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150413e-59AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007203253.20.0B3 domain-containing protein At2g36080
SwissprotQ9FNI34e-63Y5625_ARATH; B3 domain-containing protein At5g06250
TrEMBLA0A251N9J50.0A0A251N9J5_PRUPE; Uncharacterized protein
STRINGEMJ044520.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57393452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06250.22e-57B3 family protein