PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.7G093100.2.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family NF-YA
Protein Properties Length: 322aa    MW: 35354.7 Da    PI: 9.7194
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.7G093100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA96.62.8e-30154209258
           CBFB_NFYA   2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                          p+YVNaKQy++I++RRq+Rak+  e++  ++ rkpy+heSRh hA+rRpRg+gGrF
  Prupe.7G093100.2.p 154 GPIYVNAKQYHGIIRRRQSRAKAVMENRA-AALRKPYMHESRHLHAMRRPRGCGGRF 209
                         69***************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005215.8E-33151212IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115234.907152212IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006165.5E-23155177IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.3E-26155209IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006165.5E-23186209IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MAMQTVYFKE HEGITNPMGQ LSSALSGPWW SAFGSQPSYG ESCGQSKPFT MEHPSSGDQL  60
TATKLTGRGT EQGLDKGNTN QFTIFPGDGQ KSQAAISLQS SPQKYRAHFE LGFSQPMICA  120
KYPYMDQCYG LFSTYGPQIS GRIMLPLNLT ADEGPIYVNA KQYHGIIRRR QSRAKAVMEN  180
RAAALRKPYM HESRHLHAMR RPRGCGGRFL NTKTINNGKN RTEGTQVGDG QLFRHSGSHS  240
SELLQSESGT LNSSKETNGS SSNISGSEVT SVYSRRDLDR FSINHLRPSV HSLSDVMDSV  300
RGMVIPTKWV AAGDNCCNLK V*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_A2e-16153210260HAPB protein
4g92_A2e-16153210260HAPB protein
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.7G093100.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007203003.20.0nuclear transcription factor Y subunit A-10
TrEMBLA0A251N9430.0A0A251N943_PRUPE; Uncharacterized protein
STRINGXP_008241076.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.21e-67nuclear factor Y, subunit A10