PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Prupe.7G092400.5.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 330aa MW: 37335.7 Da PI: 6.1312 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 155.8 | 1.9e-48 | 6 | 133 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lppGfrF+Ptd elv++yLk+kv gk+l++ ++i+evdi+k+ PwdLp k++ +++ +wyfF+++++ky+tg r +ra + gyWkatgkd+ Prupe.7G092400.5.p 6 LPPGFRFSPTDVELVQYYLKRKVMGKRLHF-NFIAEVDIHKYAPWDLPeKSCWQGDLKWYFFCPTSRKYPTGARVKRANECGYWKATGKDR 95 79**************************99.99***************656666788********************************** PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 +vl +ge+ g ktL+f++grapkge+tdWvmheyrle Prupe.7G092400.5.p 96 SVLY-NGEVSGWIKTLIFHRGRAPKGERTDWVMHEYRLE 133 ****.999*****************************85 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.97E-57 | 4 | 155 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 54.093 | 6 | 155 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.8E-24 | 7 | 132 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 330 aa Download sequence Send to blast |
MRKSPLPPGF RFSPTDVELV QYYLKRKVMG KRLHFNFIAE VDIHKYAPWD LPEKSCWQGD 60 LKWYFFCPTS RKYPTGARVK RANECGYWKA TGKDRSVLYN GEVSGWIKTL IFHRGRAPKG 120 ERTDWVMHEY RLEAKNLADS DVLQDSYVIC MIFQKDGPGP RNGAEYGAPF KEEDWTDDEA 180 EICSEAVPHA NMPEPNLVVP SNYNSSIITS THSPEGIHIG PSSESCISDA LPPSCNVLQL 240 VSSNHVTMEK PHVSNDDILS MLNCFTEGST SLMKENDKNE VVERDKLAFF FPDEGLGSAT 300 SVHLSLVMLF LLEMLVLHLM SIVMIFMKI* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 5e-46 | 6 | 155 | 15 | 168 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Ppe.20238 | 1e-149 | fruit |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the epidermal cells of the root apical region. {ECO:0000269|PubMed:20388856}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional regulator that binds specific DNA sequences on the promoter regions of target genes. {ECO:0000250|UniProtKB:Q9C8W9}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Prupe.7G092400.5.p |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021830703.1 | 1e-178 | NAC domain-containing protein 82-like | ||||
Swissprot | Q9FY82 | 8e-91 | NAC82_ARATH; NAC domain-containing protein 82 | ||||
TrEMBL | A0A251N948 | 0.0 | A0A251N948_PRUPE; Uncharacterized protein | ||||
STRING | EMJ05887 | 0.0 | (Prunus persica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G64060.1 | 4e-95 | NAC domain containing protein 103 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Prupe.7G092400.5.p |
Publications ? help Back to Top | |||
---|---|---|---|
|