PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.7G074200.1.p
Common NamePRUPE_ppa021582mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family SBP
Protein Properties Length: 384aa    MW: 41506 Da    PI: 9.8894
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.7G074200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP137.92.9e-4379156178
                         --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                 SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                         +CqvegC++dls+ak y++rhkvC  hsk+p+v+v+gleqrfCqqCsrfh+l efD++krsCrrrLa+hnerrrk+q+
  Prupe.7G074200.1.p  79 RCQVEGCQVDLSDAKAYYSRHKVCGLHSKTPKVIVAGLEQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKPQP 156
                         6**************************************************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.104.4E-3574141IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.40277154IPR004333Transcription factor, SBP-box
SuperFamilySSF1036129.55E-4178158IPR004333Transcription factor, SBP-box
PfamPF031102.0E-3280153IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0048653Biological Processanther development
GO:2000025Biological Processregulation of leaf formation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MEMSSSSMTE SGSSSSSSPP NSSTESLNGL KFGQKIYFED ASLGASYKSG SAGSSSSSGA  60
TPPKKQRAGH LAHPGQPPRC QVEGCQVDLS DAKAYYSRHK VCGLHSKTPK VIVAGLEQRF  120
CQQCSRFHQL PEFDQGKRSC RRRLAGHNER RRKPQPGSVS TRFGRLSSSL FENSNKVGSF  180
LMDFTAYPRP ADRDARATTR TERVPVNQNA NGTGKFLQHA WQSNSVTTSG RYLQGSAGGT  240
SYPDPGIPPR ECITGIADSS CALSLLSNQP CGSRNRVSGV GMNAYLNTWM NTQGVTVAQP  300
MAHAGTSNHF PTTSWGFKGN EAGSSSHEML PNLGLGQISQ PLSSQYSGML ELSQQNRRQQ  360
QHMELGHTRA YDSSTNQQMH WSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-31801531184squamosa promoter binding protein-like 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00307DAPTransfer from AT2G42200Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.7G074200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007203426.10.0squamosa promoter-binding-like protein 9
TrEMBLM5WCY20.0M5WCY2_PRUPE; Uncharacterized protein
STRINGEMJ046250.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42083359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42200.11e-71squamosa promoter binding protein-like 9