PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.7G064600.1.p | ||||||||
Common Name | PRUPE_ppa009186mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | B3 | ||||||||
Protein Properties | Length: 304aa MW: 34765 Da PI: 9.9819 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 55.1 | 1.4e-17 | 16 | 101 | 2 | 96 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 fkvl s+rl++p f+ + +g s + tl+d+sg W+v l + +++r+++ +GW++Fvk++ L+ ++vF +dg+s+f Prupe.7G064600.1.p 16 FKVL--V-GEFSQRLSIPPAFMYHVNGR--LSPKCTLRDPSGDCWTVGL--EVRGDRFFFHEGWQRFVKDHSLEIANVLVFDYDGKSKF-- 97 5555..2.334568********666555..66699**************..*********************************99988.. PP EEEE CS B3 93 vvkv 96 v++ Prupe.7G064600.1.p 98 DVTL 101 5555 PP | |||||||
2 | B3 | 57.3 | 2.8e-18 | 185 | 279 | 6 | 99 |
..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 ++++ ++ r+ +pk+ a + g++ +k +++ed++g sW+vkl+ + ++gr ++tkGW+e + an++ gD++vF+l++ + + ++ Prupe.7G064600.1.p 185 IRAMRKNRYRMNFPKELAVAKGLIR--KKSVRVEDPHGISWDVKLRLdekEHNGGRLLMTKGWSECCYANNISLGDTLVFELVNAMHGGMK 273 5566778899************995..557***************99877777778***************************999999** PP EEEE-S CS B3 94 vkvfrk 99 +++fr Prupe.7G064600.1.p 274 MHIFRG 279 ***996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.29E-23 | 9 | 103 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.3E-23 | 9 | 104 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.366 | 12 | 105 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 5.54E-18 | 13 | 103 | No hit | No description |
SMART | SM01019 | 2.9E-15 | 15 | 105 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.2E-14 | 15 | 99 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.73E-16 | 178 | 280 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 8.3E-17 | 178 | 279 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.393 | 180 | 280 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 4.55E-15 | 183 | 278 | No hit | No description |
SMART | SM01019 | 2.3E-9 | 184 | 280 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.0E-16 | 185 | 279 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 304 aa Download sequence Send to blast |
MGRKPTKPSP KIPSFFKVLV GEFSQRLSIP PAFMYHVNGR LSPKCTLRDP SGDCWTVGLE 60 VRGDRFFFHE GWQRFVKDHS LEIANVLVFD YDGKSKFDVT LYDPIGSEKE LEPAKKRRGN 120 RARVKEEIIE LDTEEPDKDS EEDARMSNIR KRKSFKSGKR IARTDGGNET SNAPIVFRSK 180 HLCFIRAMRK NRYRMNFPKE LAVAKGLIRK KSVRVEDPHG ISWDVKLRLD EKEHNGGRLL 240 MTKGWSECCY ANNISLGDTL VFELVNAMHG GMKMHIFRGN SYVVLDASCV KYQGYVVENL 300 ALQ* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 114 | 124 | KKRRGNRARVK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppe.19395 | 0.0 | fruit |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.7G064600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FM253563 | 1e-168 | FM253563.1 Prunus cerasifera BAC insert containing Ma gene, resistant Ma1 allele, clone 76H19. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007202358.1 | 0.0 | putative B3 domain-containing protein At5g66980 | ||||
TrEMBL | M5VQI5 | 0.0 | M5VQI5_PRUPE; Uncharacterized protein | ||||
STRING | EMJ03557 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7185 | 15 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66980.1 | 2e-21 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.7G064600.1.p |
Entrez Gene | 18770785 |