PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.7G064500.1.p | ||||||||
Common Name | PRUPE_ppb019633mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | FAR1 | ||||||||
Protein Properties | Length: 130aa MW: 15355.6 Da PI: 10.8046 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 43.4 | 1.1e-13 | 21 | 109 | 3 | 90 |
FAR1 3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkkteke.rrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 Y++Y+ +GF++r+s+ ++s + g +t+r++ Cskeg+ +++ +++e+ r+ r++tr + + v+ + ++++ v+k+++eH H la Prupe.7G064500.1.p 21 YSNYSLAIGFTIRRSRLRRS-KGGVVTNRQWLCSKEGSISKKWTNREDIvRTLRKKTRENHYTAFAVQYCHkRDVYIVNKFVNEHIHRLA 109 9******************9.8889**************9999885554155799999999999****99989**************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.8E-11 | 21 | 109 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 130 aa Download sequence Send to blast |
MPMNDLEGRE FANFEEAKRS YSNYSLAIGF TIRRSRLRRS KGGVVTNRQW LCSKEGSISK 60 KWTNREDIVR TLRKKTRENH YTAFAVQYCH KRDVYIVNKF VNEHIHRLAH SHKVLFLRSH 120 RCVKESDIA* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.7G064500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020424555.1 | 1e-56 | protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | M5WFQ4 | 5e-91 | M5WFQ4_PRUPE; Uncharacterized protein | ||||
STRING | EMJ05610 | 8e-92 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15759 | 4 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43280.1 | 2e-09 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.7G064500.1.p |
Entrez Gene | 18771633 |