PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.7G060700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | ERF | ||||||||
Protein Properties | Length: 196aa MW: 21933.2 Da PI: 11.0589 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.7 | 3.8e-20 | 77 | 126 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +++GVr+++ +grW+AeIrdp+ r kr++lg+f+taeeAa +++a+ l+g Prupe.7G060700.1.p 77 KFRGVRRRP-WGRWAAEIRDPT----RrKRVWLGTFDTAEEAATVYDRAAVLLKG 126 89*******.**********84....34*********************987766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 24.329 | 77 | 134 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-30 | 77 | 135 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.9E-13 | 77 | 121 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.11E-22 | 77 | 135 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 8.58E-33 | 77 | 136 | No hit | No description |
SMART | SM00380 | 3.6E-37 | 77 | 140 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-10 | 78 | 89 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-10 | 100 | 116 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence Send to blast |
MVKFSEQVTT MIKLITHENQ NSPVNPTHLP PKLVRIILTD ADATDSSSDE EDSGVRRVKR 60 HKLGSRSPGS DQTRLNKFRG VRRRPWGRWA AEIRDPTRRK RVWLGTFDTA EEAATVYDRA 120 AVLLKGPDAV TNFPNAAMTE AKVVVGVGVL PTSVSAPRFQ RTFSAIQSIL NTKLILMIFI 180 AKLNENYKYS QKKKT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-21 | 64 | 135 | 4 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 55 | 62 | RRVKRHKL |
2 | 81 | 100 | RRRPWGRWAAEIRDPTRRKR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Activates the defense genes of plants. {ECO:0000269|PubMed:11971137}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.7G060700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT369555 | 1e-115 | KT369555.1 Prunus pseudocerasus AP2/EREBP family transcription factor-like protein 23 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007206784.2 | 8e-93 | pathogenesis-related genes transcriptional activator PTI6 | ||||
Swissprot | O04682 | 6e-39 | PTI6_SOLLC; Pathogenesis-related genes transcriptional activator PTI6 | ||||
TrEMBL | A0A251N7H4 | 1e-141 | A0A251N7H4_PRUPE; Uncharacterized protein | ||||
STRING | EMJ04660 | 5e-95 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5585 | 32 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G11140.1 | 7e-30 | cytokinin response factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.7G060700.1.p |