PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.7G055900.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MIKC_MADS
Protein Properties Length: 237aa    MW: 27004.8 Da    PI: 10.0853
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.7G055900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF901.2e-28959151
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        k+ien   rqvtf+kRrng+lKKA+ELSvLCdaevavi+f+stg+lye+ss
  Prupe.7G055900.1.p  9 KKIENVNSRQVTFTKRRNGLLKKAKELSVLCDAEVAVIVFASTGRLYEFSS 59
                        68***********************************************96 PP
2K-box52.42.2e-189316825100
               K-box  25 kkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                         ++ei +L+    +++G++L+ Ls+keLqqLe+qL +++  +++kK+e+lle ++ ++  e+++ een++Lrk+lee
  Prupe.7G055900.1.p  93 QNEIATLRLACMRMMGKELHGLSYKELQQLEEQLREGVLFVKQKKEEILLETLKSSRLLEQRAVEENENLRKQLEE 168
                         678999999999*************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.618161IPR002100Transcription factor, MADS-box
SMARTSM004322.7E-39160IPR002100Transcription factor, MADS-box
CDDcd002653.73E-40272No hitNo description
SuperFamilySSF554552.62E-30276IPR002100Transcription factor, MADS-box
PRINTSPR004046.5E-29323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003193.8E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004046.5E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004046.5E-293859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129710.27182172IPR002487Transcription factor, K-box
PfamPF014862.8E-1193166IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MGRGRIEIKK IENVNSRQVT FTKRRNGLLK KAKELSVLCD AEVAVIVFAS TGRLYEFSST  60
SMPHTLLRYK KGGEPNFVQK RKVEPNRDVN GPQNEIATLR LACMRMMGKE LHGLSYKELQ  120
QLEEQLREGV LFVKQKKEEI LLETLKSSRL LEQRAVEENE NLRKQLEEMR QTHKPNWQIV  180
PASDHPLESS KAVSSYEPDT YLHLGLSSSS DAHHQKRKAA KIERNSNDSG SQVVSH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-23175175MEF2C
5f28_B2e-23175175MEF2C
5f28_C2e-23175175MEF2C
5f28_D2e-23175175MEF2C
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.7G055900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008244251.11e-168PREDICTED: agamous-like MADS-box protein AGL18
TrEMBLA0A251N7651e-173A0A251N765_PRUPE; Uncharacterized protein
STRINGXP_008244251.11e-167(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35823260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57390.12e-54AGAMOUS-like 18