PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.7G044800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | B3 | ||||||||
Protein Properties | Length: 455aa MW: 52277.8 Da PI: 8.5999 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 35.7 | 1.5e-11 | 22 | 106 | 10 | 99 |
HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 ++k+ r+ +p kf+ ++g++ s + l+ +sg ++e++l+ r ++g++++ kGW eF k L+ g ++vF ++g+s+f v +f+k Prupe.7G044800.1.p 22 TSKKTRIKIPMKFLMRYGEN--LSSPVHLKLPSGVEMEIELR-RSNDGWVWFDKGWPEFSKLCSLDYGNSLVFGYEGNSNF--SVFIFDK 106 567789***********977..6667***************3.666677****************************9999..7777776 PP | |||||||
2 | B3 | 54.2 | 2.6e-17 | 196 | 276 | 6 | 89 |
..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 +++ + +g l lp kfa++h ++k++ + ++l+ ++gr+W v+++y+ + +++GW F+++n+Lk+gD++vF l++ +e Prupe.7G044800.1.p 196 IQPVYIHRGYLHLPSKFARRH-LVKKRARNIILKILDGRTWLVEFKYETSI--ARFQRGWLAFARDNNLKVGDVCVFVLIDCNE 276 5566677899***********.44556779***************555554..669**********************986333 PP | |||||||
3 | B3 | 51.5 | 1.8e-16 | 373 | 453 | 15 | 98 |
-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 +l +p +fa+++ +k +++t+tl+ + rsW v+li k ++ l++GW eFv +n L egD+++F+l++r++ l+v++fr Prupe.7G044800.1.p 373 ILHVPVTFARSFVKK--RKQTVTLQV-RERSWPVNLIGHTKESGAKLSGGWCEFVTENCLMEGDVCIFELIERNDIVLKVHIFR 453 5789*****999755..444677655.78*******9877777899*************************999999****997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 4.0E-17 | 8 | 107 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.49E-17 | 9 | 107 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.54E-9 | 12 | 105 | No hit | No description |
PROSITE profile | PS50863 | 11.096 | 13 | 107 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.2E-5 | 14 | 107 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.0E-9 | 22 | 106 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 4.3E-22 | 184 | 285 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 9.61E-23 | 185 | 286 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.94E-20 | 190 | 285 | No hit | No description |
PROSITE profile | PS50863 | 14.706 | 191 | 287 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 8.7E-15 | 192 | 285 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.9E-15 | 194 | 277 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.0E-19 | 356 | 453 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.53E-17 | 357 | 453 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.238 | 359 | 454 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 9.52E-17 | 361 | 453 | No hit | No description |
SMART | SM01019 | 2.1E-10 | 363 | 453 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.1E-14 | 374 | 453 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 455 aa Download sequence Send to blast |
MASLQDSPAS MPHFLRIILD KTSKKTRIKI PMKFLMRYGE NLSSPVHLKL PSGVEMEIEL 60 RRSNDGWVWF DKGWPEFSKL CSLDYGNSLV FGYEGNSNFS VFIFDKTATE IEYPKPEMEE 120 TDSDFEEEED DDDESGHARG EIKRENDMPT KKDFGGSSST RIFLGRTHPL TKSEKALALQ 180 RANAFESEYP YFLVAIQPVY IHRGYLHLPS KFARRHLVKK RARNIILKIL DGRTWLVEFK 240 YETSIARFQR GWLAFARDNN LKVGDVCVFV LIDCNERLFE VFFYRTNDAE DCPLSPGHGG 300 VAIDRVEKRR NPMIKVEIDC TTNYENGKYK RLNTGGQVTQ RPLNSSSRAL EAANRFTPKD 360 PSFRVTLGST RLILHVPVTF ARSFVKKRKQ TVTLQVRERS WPVNLIGHTK ESGAKLSGGW 420 CEFVTENCLM EGDVCIFELI ERNDIVLKVH IFRC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 3e-19 | 165 | 453 | 22 | 144 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 3e-19 | 165 | 453 | 22 | 144 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.7G044800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF324923 | 4e-40 | AF324923.1 Prunus armeniaca microsatellite ssrPaCITA13 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020424179.1 | 0.0 | B3 domain-containing transcription factor VRN1 isoform X2 | ||||
TrEMBL | A0A251N6Q1 | 0.0 | A0A251N6Q1_PRUPE; Uncharacterized protein | ||||
STRING | XP_008240722.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF98 | 34 | 369 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 9e-22 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.7G044800.1.p |