PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.7G044500.1.p | ||||||||
Common Name | PRUPE_ppa019889mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | B3 | ||||||||
Protein Properties | Length: 179aa MW: 20900.2 Da PI: 9.9344 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 55.5 | 1e-17 | 89 | 169 | 5 | 88 |
-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 5 ltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 +p+ + +g l lp kfa++h +++++ ++l+ ++gr+W v+++y+ + +++GW F+++n+Lk+gD++vF l++ + Prupe.7G044500.1.p 89 AIPPVYIHRGYLHLPSKFARRHlVKQPAR--NIILKILDGRTWLVEFKYETSI--ARFQRGWLAFARDNNLKVGDMCVFVLIDCN 169 56777888999***********7555555..69999999********555554..669**********************98633 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 7.02 | 1 | 55 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.8E-21 | 78 | 176 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.14E-22 | 79 | 174 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.22E-20 | 85 | 178 | No hit | No description |
PROSITE profile | PS50863 | 14.353 | 85 | 178 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 9.3E-11 | 86 | 176 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.1E-16 | 87 | 170 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 179 aa Download sequence Send to blast |
MEIELRRSKD GWVWFDKGWP EFSKLCSLDY GENDMPTKKD FGGSSSNQIF VKRTPDVLGR 60 THPLTKSEKA LALQRANAFK SEYPYFLVAI PPVYIHRGYL HLPSKFARRH LVKQPARNII 120 LKILDGRTWL VEFKYETSIA RFQRGWLAFA RDNNLKVGDM CVFVLIDCNE RLFEVFFF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 3e-14 | 59 | 178 | 22 | 140 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 3e-14 | 59 | 178 | 22 | 140 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.7G044500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020424180.1 | 1e-106 | B3 domain-containing transcription factor VRN1 isoform X3 | ||||
TrEMBL | M5WCL7 | 1e-130 | M5WCL7_PRUPE; Uncharacterized protein (Fragment) | ||||
STRING | EMJ04515 | 1e-131 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF98 | 34 | 369 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49480.1 | 3e-17 | related to vernalization1 1 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.7G044500.1.p |
Entrez Gene | 18770376 |