PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.7G039600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | B3 | ||||||||
Protein Properties | Length: 572aa MW: 64622.5 Da PI: 4.8863 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 36.1 | 1.1e-11 | 17 | 108 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsef 90 ffk+ +++ r+ +p +f+ ++g++ s + l+ ++g ++e++l r++ ++ +++ kGW eF k L+ g +vF ++g+s+f Prupe.7G039600.1.p 17 FFKII--LEDSSKIRIKIPMRFLMKYGEN--LSSPVHLKLPNGAEMEIEL--RRCNNGgVWFDKGWPEFSKFCSLDYGSWLVFGYEGNSNF 101 56666..56677788***********977..566799999**********..55555559***************************9999 PP ..EEEEE-S CS B3 91 elvvkvfrk 99 +v +f++ Prupe.7G039600.1.p 102 --HVLIFDR 108 ..*****98 PP | |||||||
2 | B3 | 52.8 | 7.5e-17 | 279 | 371 | 4 | 99 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 v +++ + k++ l +p fa++h ++++ + + l+ ++gr+W+vk++y+k+ r ++ GW +Fv++n+L++ D++vF+l+++ + ++ v Prupe.7G039600.1.p 279 VVMQPWYVKQSFLPMPSGFAKRHLIEHPAG-NVFLRVSDGRTWSVKFKYEKSVAR--FQYGWLGFVRDNNLEADDVCVFSLIEDVKLSFDV 366 44566666666799*********4444444.7***************77777665..89***********************998888888 PP EEE-S CS B3 95 kvfrk 99 +fr+ Prupe.7G039600.1.p 367 VFFRT 371 88876 PP | |||||||
3 | B3 | 46.5 | 6.4e-15 | 423 | 506 | 5 | 94 |
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 +++++ ++ ++lp kf + ++k s +++l+ ++gr+W+v l +k++ +++GW + v++n+L++gD ++F l+++++ ++++ Prupe.7G039600.1.p 423 SIRPSYINHWSMWLPSKFYKLSPSIK-HSCEVILQVSNGRTWSVGL--SKGR--PRFRRGWMDVVRDNHLEVGDLCLFVLISSKS-TPLF 506 45667777778********7775555.4569***************..6665..559***********************98544.4544 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.69E-19 | 10 | 108 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.4E-18 | 11 | 109 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.23E-13 | 15 | 107 | No hit | No description |
PROSITE profile | PS50863 | 10.377 | 15 | 109 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.0E-7 | 17 | 109 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.0E-9 | 17 | 108 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.6E-22 | 270 | 370 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 9.81E-21 | 271 | 370 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.50E-21 | 275 | 370 | No hit | No description |
PROSITE profile | PS50863 | 13.747 | 276 | 372 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.5E-11 | 277 | 372 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.8E-15 | 279 | 370 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.1E-18 | 412 | 512 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.75E-18 | 415 | 508 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.04E-19 | 418 | 512 | No hit | No description |
PROSITE profile | PS50863 | 12.379 | 419 | 514 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.5E-8 | 420 | 514 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.5E-13 | 422 | 506 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 572 aa Download sequence Send to blast |
MASLHDPPTF SASIPHFFKI ILEDSSKIRI KIPMRFLMKY GENLSSPVHL KLPNGAEMEI 60 ELRRCNNGGV WFDKGWPEFS KFCSLDYGSW LVFGYEGNSN FHVLIFDRTA TEIEYPKPEM 120 EETDSEEEEE EQDDADDGSV EILDVSEEEE QQDDADDGSV EILDVSEEEE QQDDADDESV 180 ENLDVFPPCP RKAREKSPLP CPQPHKKMRT RSSGMMLEES LSNKASYCSK SEMKREKSPL 240 VPSEVKDGVG RMHISTTSGK AIALQRAIAF KSVNPSFRVV MQPWYVKQSF LPMPSGFAKR 300 HLIEHPAGNV FLRVSDGRTW SVKFKYEKSV ARFQYGWLGF VRDNNLEADD VCVFSLIEDV 360 KLSFDVVFFR TTEEAANCLL SPGRHDFPTK KDGGGTSSNR TGKATALDRA NAFRSQNPSF 420 IVSIRPSYIN HWSMWLPSKF YKLSPSIKHS CEVILQVSNG RTWSVGLSKG RPRFRRGWMD 480 VVRDNHLEVG DLCLFVLISS KSTPLFDLVI FRSGEGAKCT NDGEQIVPTK EETDNEDGDS 540 SDDSSNDSSD DSVEIMDKFP PPRKTRVVKR S* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 4e-14 | 250 | 373 | 22 | 144 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 4e-14 | 250 | 373 | 22 | 144 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppe.4571 | 0.0 | fruit |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.7G039600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020423288.1 | 0.0 | B3 domain-containing transcription factor VRN1 isoform X1 | ||||
TrEMBL | A0A251N6F1 | 0.0 | A0A251N6F1_PRUPE; Uncharacterized protein | ||||
STRING | EMJ04482 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF98 | 34 | 369 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49475.1 | 4e-19 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.7G039600.1.p |