PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.7G031500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | bHLH | ||||||||
Protein Properties | Length: 252aa MW: 28269.9 Da PI: 7.5385 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40.2 | 6e-13 | 81 | 127 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+E+rRR+riNs +++Lr llP + K +Ka+ L k+v+ +k+L Prupe.7G031500.1.p 81 KNHKEAEKRRRERINSHLDKLRGLLPCN-----SKTDKASLLAKVVQRVKEL 127 58*************************8.....7************999988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.447 | 78 | 127 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.5E-10 | 81 | 127 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.14E-11 | 81 | 130 | No hit | No description |
SuperFamily | SSF47459 | 2.22E-14 | 82 | 142 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.6E-14 | 82 | 136 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.2E-12 | 84 | 133 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd04873 | 4.80E-4 | 166 | 230 | No hit | No description |
Gene3D | G3DSA:3.30.70.260 | 2.3E-5 | 166 | 232 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0042538 | Biological Process | hyperosmotic salinity response | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0009941 | Cellular Component | chloroplast envelope | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MQPADHQNQE LYRFLAQNGL INMNNNNGSY VGFPGGASCD QFSAMQSFCS SSSYNYYPLE 60 VSGVSTEHET SPQDRALAAL KNHKEAEKRR RERINSHLDK LRGLLPCNSK TDKASLLAKV 120 VQRVKELKQQ TSELTELESF PSETDEITVL SSDDYSSDGR IIFKASLCCE DRTDLLPDLI 180 EILKSLHLKT LRAEMATLGG RIRNVLIVAA DKDHTIESVH FLQNALKSLL ERSNASERSK 240 RRRVLDRTLV L* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 239 | 243 | KRRRV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.7G031500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP689424 | 0.0 | KP689424.1 Prunus pseudocerasus isolate Unigene8039 bHLH transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007202577.2 | 0.0 | transcription factor bHLH106 | ||||
Swissprot | O80674 | 2e-90 | BH106_ARATH; Transcription factor bHLH106 | ||||
TrEMBL | A0A251N653 | 0.0 | A0A251N653_PRUPE; Uncharacterized protein | ||||
STRING | XP_008240669.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6672 | 32 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41130.1 | 2e-87 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.7G031500.1.p |
Publications ? help Back to Top | |||
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