PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.7G027500.1.p | ||||||||
Common Name | PRUPE_ppa026577mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | G2-like | ||||||||
Protein Properties | Length: 324aa MW: 34711.7 Da PI: 6.948 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 96.6 | 1.9e-30 | 109 | 162 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +prl+Wtp+LH+rFv+av++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl Prupe.7G027500.1.p 109 RPRLVWTPQLHKRFVDAVAHL-GIKNAVPKTIMQLMSVDGLTRENVASHLQKYRL 162 59*******************.********************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.23E-20 | 106 | 166 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 11.059 | 106 | 165 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-30 | 108 | 167 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.6E-24 | 110 | 162 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.3E-7 | 112 | 161 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 324 aa Download sequence Send to blast |
MREDESNWFS RWEEELPSPE ELMPLSQTLI TPDLALAFDI RNNNPNNPSS PQNQQPPQPP 60 QPPHTPPPPP PSSLPPATPT HPNSSAEFAD SADLGSGAGG EEPARTLKRP RLVWTPQLHK 120 RFVDAVAHLG IKNAVPKTIM QLMSVDGLTR ENVASHLQKY RLYLKRMQGL SGGGSGGGGG 180 GGGGLAASAD PATDHLFASS PVPAHFLHPH PGGRPNSEHF MPFVPVALQQ HHHQQQQQQQ 240 QMAAAAAAAV AAHPQYHRQV GHFGSPPNGQ FEHPFLARQS SQPVHRMGAP LHNPVPGSYV 300 EDLESANATG GRKVLTLFPT GED* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5lxu_A | 1e-31 | 109 | 165 | 1 | 57 | Transcription factor LUX |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, leaves, stems, petioles, filaments, stigma, pedicels, sepals, anthers, petals, and siliques. {ECO:0000269|PubMed:20331973}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway. {ECO:0000269|PubMed:20331973}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.7G027500.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by drought, salt and abscisic acid (ABA). Down-regulated by cold. {ECO:0000269|PubMed:20331973}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007203675.1 | 0.0 | transcription factor PCL1 | ||||
Swissprot | O22210 | 3e-64 | MYBC1_ARATH; Transcription factor MYBC1 | ||||
TrEMBL | M5VU33 | 0.0 | M5VU33_PRUPE; Uncharacterized protein | ||||
STRING | EMJ04874 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8542 | 30 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10760.1 | 1e-85 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.7G027500.1.p |
Entrez Gene | 18771699 |
Publications ? help Back to Top | |||
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