PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Prupe.7G023300.2.p

Common Name

PRUPE_ppa009512mg

Organism

Prunus persica

Taxonomic ID

3760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

G2-like

Protein Properties

Length: 290aa MW: 31486.3 Da PI: 8.4471

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.7G023300.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	105.6	2.8e-33	46	100	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt++LH+rFv+a++qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl Prupe.7G023300.2.p 46 KQRLRWTSDLHDRFVDAITQLGGPDRATPKGVLRVMGVPGLTIYHVKSHLQKYRL 100 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.884	43	103	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.2E-32	44	101	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.76E-17	45	100	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.7E-26	46	101	IPR006447	Myb domain, plants
Pfam	PF00249	1.5E-7	48	99	IPR001005	SANT/Myb domain
Pfam	PF14379	1.6E-24	132	178	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
MYHAKKFSTA SLVPHKPQSS EELANVGVVS GGSSVKSPTP SGGSGKQRLR WTSDLHDRFV 60 DAITQLGGPD RATPKGVLRV MGVPGLTIYH VKSHLQKYRL AKYLPESPAD GSKDEKKGSG 120 DSLSCSDSSP GVQINEALRM QMEVQKRLHE QLEVQRQLQM RIEAQGKYLQ KIIEEQEKLG 180 GVLKGSDALP SAEDKQKPSQ LETAGDASAT PSSPRKKQRV DDGLPDGCTT SNVPPKADQK 240 NEFVGQWDRD LYGSDGGFGF NLQREFKERD GDAAQKAPME LDPLCGSKQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-23	45	103	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-23	45	103	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-23	45	103	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-23	45	103	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-23	45	103	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-23	45	103	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-23	45	103	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-23	45	103	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.7G023300.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FR828552	0.0	FR828552.1 Rosa hybrid cultivar mRNA for putative MYB transcription factor (myb1 gene), cultivar Yellow Island.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007202402.1	0.0	myb family transcription factor PHL7 isoform X1
Refseq	XP_020424093.1	0.0	myb family transcription factor PHL7 isoform X1
Swissprot	Q9SJW0	2e-73	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	M5VRH6	0.0	M5VRH6_PRUPE; Uncharacterized protein
STRING	EMJ03601	0.0	(Prunus persica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	2e-69	G2-like family protein

Link Out ? help Back to Top
Phytozome	Prupe.7G023300.2.p
Entrez Gene	18769160