PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.7G016700.1.p
Common NamePRUPE_ppa006434mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 413aa    MW: 45258.2 Da    PI: 8.7205
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.7G016700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.82.1e-17135180147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         rg W + Ed +l+++v+q+G+ +W++Ia+++  gR++k+c++rw++ 
  Prupe.7G016700.1.p 135 RGHWRPAEDSKLKELVAQYGPQNWNLIAEHLD-GRSGKSCRLRWFNQ 180
                         899*****************************.***********996 PP
2Myb_DNA-binding56.75.5e-18187230146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         r ++++eE+e+l+ a+k++G++ W+ Iar ++ gRt++ +k++w+ 
  Prupe.7G016700.1.p 187 RRAFSEEEEERLLAAHKLYGNK-WAMIARLFP-GRTDNAVKNHWHV 230
                         678*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.108130181IPR017930Myb domain
SMARTSM007179.4E-15134183IPR001005SANT/Myb domain
SuperFamilySSF466891.68E-28134228IPR009057Homeodomain-like
PfamPF002491.8E-16135180IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-26136188IPR009057Homeodomain-like
CDDcd001678.19E-14138179No hitNo description
PROSITE profilePS5129427.25182236IPR017930Myb domain
SMARTSM007172.7E-15186234IPR001005SANT/Myb domain
PfamPF002492.3E-14187229IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-20189235IPR009057Homeodomain-like
CDDcd001679.42E-8198229No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MAPQHLKSDC VGFTRYEDLN FLPPPPVSHQ LSLSNTFVAM VHPHFYSGGQ DHSGTSSEPF  60
SPSSSQRSTK PWGFKPLENG GTRTTDHGDQ YPVLLGIDQK KGMPLSLAGE EADEGRSLAA  120
AGRTGAGGHT KSCARGHWRP AEDSKLKELV AQYGPQNWNL IAEHLDGRSG KSCRLRWFNQ  180
LDPRINRRAF SEEEEERLLA AHKLYGNKWA MIARLFPGRT DNAVKNHWHV IMARKHREQS  240
NVYKRRKPST PQATQLPKEF HHPPVTNFQK NTSSTESTVS ISTIDDTQSA STCTELSLTP  300
STRLPLSFFS KLHPFQQHQN FGSQMGSSSD GRSGKIIGNG NGLCKTGPLE GAMMGVDQSG  360
HQSDSNSEIS GDGSVTTTRT NVSLSGENQN QNLNNNEKIS MSFIDFLGVG MG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-341352357107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.7G016700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007202167.10.0transcription factor MYB80
TrEMBLM5VQV00.0M5VQV0_PRUPE; Uncharacterized protein
STRINGEMJ033660.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23034243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.12e-71myb domain protein 105