PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.7G016400.2.p
Common NamePRUPE_ppa023023mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family Dof
Protein Properties Length: 381aa    MW: 41269.4 Da    PI: 7.9316
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.7G016400.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof121.82.4e-383190261
              zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                        ++k l+cprC+s +tkfCy+nny+++qPr+fCk+C+ryWt+GG++r vPvG+grrknk+ 
  Prupe.7G016400.2.p 31 PDKVLPCPRCNSLDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRSVPVGAGRRKNKHL 90
                        78999*****************************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074787.0E-292388IPR003851Zinc finger, Dof-type
PfamPF027011.3E-313289IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.4913589IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103773IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MQVNEARVNA KSNSKQAENR ILEQEEDFQK PDKVLPCPRC NSLDTKFCYF NNYNVNQPRH  60
FCKNCQRYWT AGGTMRSVPV GAGRRKNKHL ASQYHQIIVS SDGVPSTRLE TTDSINHQLL  120
SCSKSSSTFG LPDRAGTVLK FGHEAPLCES MDTVVNLRDL RTCVEIGSVS GRESGDEPSC  180
VSSVTACGNQ GSELSKNILQ RDGIGLQGSC SEPNISHPLN YYPIAPLVFR WNPGWRNAAP  240
PAAPQHSQSI CVQNCTTPNQ VQWYPTPVLV VPGPCPQSIP LQTVPAPSWG CMPVCPAGMG  300
NLLLSGSNGC VSPSSSTSNS CCSGNGSPTL GKHSRDSNIM DEEKSENRVL VPKPLRVDDP  360
DEASKSPIWA SLGIKRDLKT *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.7G016400.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2535430.0AC253543.1 Prunus persica cultivar Lovell clone JGIBIXB-13M5, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020424707.10.0cyclic dof factor 3
TrEMBLM5VTG50.0M5VTG5_PRUPE; Uncharacterized protein (Fragment)
STRINGEMJ046620.0(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39660.24e-42cycling DOF factor 2