PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Prupe.7G016400.1.p

Common Name

PRUPE_ppa023023mg

Organism

Prunus persica

Taxonomic ID

3760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

Dof

Protein Properties

Length: 475aa MW: 51461.9 Da PI: 7.569

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.7G016400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	121.3	3.3e-38	125	184	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k l+cprC+s +tkfCy+nny+++qPr+fCk+C+ryWt+GG++r vPvG+grrknk+ Prupe.7G016400.1.p 125 PDKVLPCPRCNSLDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRSVPVGAGRRKNKHL 184 78999*****************************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	6.0E-29	117	182	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.8E-31	126	183	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.491	129	183	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	131	167	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 475 aa Download sequence Send to blast
MYVKAKAISF CGDMSETESR SNENSNDIKL FGRTIPLLQT QIAAITCKNS QVPPKSQFMD 60 SCTELTKAEA DGPCAENSVQ AGTSAICKEE EKSRMQVNEA RVNAKSNSKQ AENRILEQEE 120 DFQKPDKVLP CPRCNSLDTK FCYFNNYNVN QPRHFCKNCQ RYWTAGGTMR SVPVGAGRRK 180 NKHLASQYHQ IIVSSDGVPS TRLETTDSIN HQLLSCSKSS STFGLPDRAG TVLKFGHEAP 240 LCESMDTVVN LRDLRTCVEI GSVSGRESGD EPSCVSSVTA CGNQGSELSK NILQRDGIGL 300 QGSCSEPNIS HPLNYYPIAP LVFRWNPGWR NAAPPAAPQH SQSICVQNCT TPNQVQWYPT 360 PVLVVPGPCP QSIPLQTVPA PSWGCMPVCP AGMGNLLLSG SNGCVSPSSS TSNSCCSGNG 420 SPTLGKHSRD SNIMDEEKSE NRVLVPKPLR VDDPDEASKS PIWASLGIKR DLKT*

Sequence ? help Back to Top

Protein Sequence Length: 475 aa Download sequence Send to blast

MYVKAKAISF CGDMSETESR SNENSNDIKL FGRTIPLLQT QIAAITCKNS QVPPKSQFMD  60
SCTELTKAEA DGPCAENSVQ AGTSAICKEE EKSRMQVNEA RVNAKSNSKQ AENRILEQEE  120
DFQKPDKVLP CPRCNSLDTK FCYFNNYNVN QPRHFCKNCQ RYWTAGGTMR SVPVGAGRRK  180
NKHLASQYHQ IIVSSDGVPS TRLETTDSIN HQLLSCSKSS STFGLPDRAG TVLKFGHEAP  240
LCESMDTVVN LRDLRTCVEI GSVSGRESGD EPSCVSSVTA CGNQGSELSK NILQRDGIGL  300
QGSCSEPNIS HPLNYYPIAP LVFRWNPGWR NAAPPAAPQH SQSICVQNCT TPNQVQWYPT  360
PVLVVPGPCP QSIPLQTVPA PSWGCMPVCP AGMGNLLLSG SNGCVSPSSS TSNSCCSGNG  420
SPTLGKHSRD SNIMDEEKSE NRVLVPKPLR VDDPDEASKS PIWASLGIKR DLKT*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.7G016400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC253543	0.0	AC253543.1 Prunus persica cultivar Lovell clone JGIBIXB-13M5, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020424707.1	0.0	cyclic dof factor 3
TrEMBL	A0A251N524	0.0	A0A251N524_PRUPE; Uncharacterized protein
STRING	EMJ04662	0.0	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3502	31	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	2e-44	cycling DOF factor 2

Link Out ? help Back to Top
Phytozome	Prupe.7G016400.1.p
Entrez Gene	18769470