PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.7G011300.1.p | ||||||||
Common Name | PRUPE_ppa024802mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | LBD | ||||||||
Protein Properties | Length: 264aa MW: 28499.7 Da PI: 6.7672 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 124.5 | 5.1e-39 | 53 | 154 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C aCk+lrrkC ++C++ap+f ++q +++fa+vhk+FGasnv+kll ++p ++r+da+ ++ yeA+ar+ dPvyG+v++il+lqqq+++l Prupe.7G011300.1.p 53 PCGACKFLRRKCISGCIFAPHFGSDQgAARFAAVHKVFGASNVSKLLLHIPLNRRQDAVVTISYEAQARLADPVYGCVSTILALQQQVASL 143 7***********************9989*************************************************************** PP DUF260 91 kaelallkeel 101 +aela+++++l Prupe.7G011300.1.p 144 QAELAMVQTQL 154 ******99885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.923 | 52 | 154 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.6E-38 | 53 | 151 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway | ||||
GO:1900150 | Biological Process | regulation of defense response to fungus |
Sequence ? help Back to Top |
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Protein Sequence Length: 264 aa Download sequence Send to blast |
MADQPAQGDH CTSESRRKGT SGRAGRPASN TEAAATTNNT STSSTVVVSG AAPCGACKFL 60 RRKCISGCIF APHFGSDQGA ARFAAVHKVF GASNVSKLLL HIPLNRRQDA VVTISYEAQA 120 RLADPVYGCV STILALQQQV ASLQAELAMV QTQLINSRFA FANALQISTQ QRQQHQKQQQ 180 QQQQHEQQQN MALMLQPAYS NSSSASTNLI NMCSFTSNFD LAAETAPSSQ SLDPLQLSRP 240 SQDEEDDEEE SQVPLMFAND RYT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-38 | 51 | 169 | 9 | 124 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-38 | 51 | 169 | 9 | 124 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots and flowers. {ECO:0000269|PubMed:12068116}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.7G011300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007203508.1 | 0.0 | LOB domain-containing protein 20 | ||||
Swissprot | Q9SRV3 | 9e-80 | LBD20_ARATH; LOB domain-containing protein 20 | ||||
TrEMBL | M5VTK5 | 0.0 | M5VTK5_PRUPE; Uncharacterized protein | ||||
STRING | EMJ04707 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7715 | 31 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03760.1 | 2e-65 | LOB domain-containing protein 20 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.7G011300.1.p |
Entrez Gene | 18770690 |