PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Prupe.6G364200.1.p

Common Name

PRUPE_ppa008878mg

Organism

Prunus persica

Taxonomic ID

3760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

FAR1

Protein Properties

Length: 251aa MW: 28101.6 Da PI: 8.4667

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.6G364200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	87.9	1.5e-27	80	168	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA ++GF++r++ ++s+ +g+i+ rt+vC+keg+r +k++ + + r+r+ tr+gCka++ vkk + gkw+v+k+++eH+H+l+p Prupe.6G364200.1.p 80 FYNAYALRIGFRTRVNDLSRSRVDGSIIARTLVCNKEGYRVADKRE-RMSVRPRPPTRVGCKAMISVKKLSIGKWVVAKFVKEHTHTLSP 168 ****************************************9999.999***********************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.1E-24	80	168	IPR004330	FAR1 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016021	Cellular Component	integral component of membrane

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence Send to blast
MDSVFDTEAQ NGLLDNSADV ELRLNHDGAI LATCVVEEAS SLEQIEQVGQ NSSRVEQNAV 60 EGDEPYLGQE FDSEAAAHAF YNAYALRIGF RTRVNDLSRS RVDGSIIART LVCNKEGYRV 120 ADKRERMSVR PRPPTRVGCK AMISVKKLSI GKWVVAKFVK EHTHTLSPGK GKKGSNDQST 180 TDEQMKIKEL TQQLLVERKR SASYRKIIDL LFNHIEEHTQ NLSQKIQRIT DNLQEIVSSE 240 GKGKDRRNVS *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.6G364200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020421517.1	0.0	protein FAR-RED IMPAIRED RESPONSE 1
TrEMBL	A0A251P0W7	0.0	A0A251P0W7_PRUPE; Uncharacterized protein
STRING	EMJ06789	0.0	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2453	30	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	7e-61	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Prupe.6G364200.1.p
Entrez Gene	18774737