PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.6G351000.4.p | ||||||||
Common Name | PRUPE_ppa005708mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | G2-like | ||||||||
Protein Properties | Length: 459aa MW: 51415.8 Da PI: 4.9647 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 103.7 | 1.1e-32 | 231 | 285 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr+rWt+eLHe+Fveav+qL Gse+AtPk il+lmkv+gLt++hvkSHLQkYR+ Prupe.6G351000.4.p 231 KPRMRWTQELHEAFVEAVNQLDGSERATPKGILNLMKVEGLTIYHVKSHLQKYRT 285 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.055 | 228 | 288 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.04E-17 | 229 | 285 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.4E-30 | 230 | 287 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 8.6E-25 | 231 | 285 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.3E-8 | 233 | 284 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 1.4E-19 | 316 | 363 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 459 aa Download sequence Send to blast |
MSNFGSSKAM SSSFPNLSTP LDDKYSRLPD SFQVTSQREK TRYSKLPQDS SPGHLFSSSS 60 RPNDVHFSSV SPCESRSQNS PFIFKLPVDE KSLSLTHSSH SEVQPTALIN YSEENKDISW 120 YPDSLQEFLH FPENVPDQTG LVDSSTGVIT SEDHAEKTDW SDWDPLISFD DALDPNWELP 180 IDVDAVDPKP KVLNPYSDIL VQPPQIQQHQ PVQSEEFRPS PETLSTAPPT KPRMRWTQEL 240 HEAFVEAVNQ LDGSERATPK GILNLMKVEG LTIYHVKSHL QKYRTARYKP ESSEGACEKV 300 STPVEETNSL DLKASMGITE ALRLQVELQK RLHEQLENQR KLQLQIEEQG KYLEKMFEQQ 360 RKMEDSRVKA ASSTVDDHAT PPSNLVCPSP GEDKPETSKH DHGKTPISAS SMSTPLEEGS 420 QDANRKKQKA QETVSQEEPD HPGDVESGTQ PTKRARNG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 7e-29 | 231 | 289 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 7e-29 | 231 | 289 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 7e-29 | 231 | 289 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 7e-29 | 231 | 289 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 7e-29 | 231 | 289 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 7e-29 | 231 | 289 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 7e-29 | 231 | 289 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 7e-29 | 231 | 289 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppe.3792 | 0.0 | fruit |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.6G351000.4.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020421921.1 | 0.0 | protein PHR1-LIKE 1 isoform X1 | ||||
TrEMBL | A0A251P0B9 | 0.0 | A0A251P0B9_PRUPE; Uncharacterized protein | ||||
STRING | EMJ06396 | 0.0 | (Prunus persica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G29000.2 | 5e-89 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Prupe.6G351000.4.p |
Entrez Gene | 18772301 |