PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.6G349400.1.p | ||||||||
Common Name | PRUPE_ppa000753mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | MYB | ||||||||
Protein Properties | Length: 1015aa MW: 113218 Da PI: 4.8501 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43 | 1e-13 | 8 | 53 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g W Ede+l+ av ++G+++W++I++ + ++++kqck rw+ +l Prupe.6G349400.1.p 8 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 53 78*****************************.************986 PP | |||||||
2 | Myb_DNA-binding | 32.7 | 1.7e-10 | 60 | 103 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT eEde+l+++ k++++ W+tIa +g Rt+ qc +r+ k+l Prupe.6G349400.1.p 60 TEWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 103 68*****************99.********8..**********9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 22.008 | 2 | 57 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.9E-18 | 5 | 56 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.0E-15 | 6 | 55 | IPR001005 | SANT/Myb domain |
Pfam | PF13921 | 4.7E-13 | 10 | 70 | No hit | No description |
CDD | cd00167 | 3.74E-12 | 10 | 53 | No hit | No description |
SuperFamily | SSF46689 | 8.63E-21 | 33 | 106 | IPR009057 | Homeodomain-like |
CDD | cd11659 | 4.88E-31 | 55 | 106 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.3E-14 | 57 | 104 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.443 | 58 | 107 | IPR017930 | Myb domain |
SMART | SM00717 | 1.7E-12 | 58 | 105 | IPR001005 | SANT/Myb domain |
Pfam | PF11831 | 4.7E-54 | 406 | 649 | IPR021786 | Pre-mRNA splicing factor component Cdc5p/Cef1 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009870 | Biological Process | defense response signaling pathway, resistance gene-dependent | ||||
GO:0010204 | Biological Process | defense response signaling pathway, resistance gene-independent | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0009507 | Cellular Component | chloroplast | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1015 aa Download sequence Send to blast |
MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT 60 EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE KLLDAACVKD DNYEPGDDPR 120 KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR 180 LASLQKRREL KAAGIDTRQR KRKRKGIDYN AEIPFEKKPP PGFYDVADED RPVEQPQFPT 240 TIEELEGKRR IDVEAQLRKQ DIAKNKIAQR QDAPSAILQA NKLNDPETVR KRSKLMLPAP 300 QISDHELEEI AKMGYASDLA GSEELTEGSG ATRALLANYS QTPRLGMTPQ RTPQRTPSGK 360 GDAIMMEAEN LARLRESQTP LLGGDNPDLH PSDFSGVTPR KKEIQTPNLM LTPSATPGGA 420 GLTPRIGMTP TRDSFGMTPK GTPIRDELRI NEEIDIHDSA KLEQRRNLQF GLGNLPQPKN 480 EYQIVMQPVP EDNEEPEEKI EEDMSDRLAR ERAEEEARQQ ALLRKRSKVL QRELPRPPAA 540 SLEFIRNSLT RADGDKSSFV PPTSVEQADE MVKKELLSVL EHDNAKYPLT EKVDKRKKKG 600 AKRSAGGPSA SVPVIEDFEE DEMTEAGSMI KEEAQYLRVA MGHEEESLDE FVDAHKTCLN 660 DLMYLPTRGA YGLSSVAANM EKLAALQNEF ENVKKKMEDD IQKAASIESK VKVRTYGYEM 720 RAKDGLWPKI EETFKQMDTA AKELECFKAL QKQEKLAASH RINNIWEEVQ KQKELERNLQ 780 KRYGDLVVEL ERVQHRMDEY RAQAEKQEEI AAMNCDQELA EATENVTVLQ TTENPDPTTA 840 SDELGSTVPG GASNGEATNL QMDGDKDIDA VKDRETVSSD VNLPANMPSA VEGENDPNSQ 900 LTSSGGIHSS GVAAQDSVSK GDNVSNNLVA TENKMVNDPD DGVISDNVTS SAVAEDQKVE 960 MRQNLTELEG SVQAAGDGGL ANGSTAIVSI EGEVENSAEN AAPNLNVFNV EETA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5mqf_L | 0.0 | 2 | 797 | 3 | 802 | Cell division cycle 5-like protein |
5xjc_L | 0.0 | 2 | 797 | 3 | 802 | Cell division cycle 5-like protein |
5yzg_L | 0.0 | 2 | 797 | 3 | 802 | Cell division cycle 5-like protein |
5z56_L | 0.0 | 2 | 797 | 3 | 802 | Cell division cycle 5-like protein |
5z57_L | 0.0 | 2 | 797 | 3 | 802 | Cell division cycle 5-like protein |
5z58_L | 0.0 | 2 | 797 | 3 | 802 | Cell division cycle 5-like protein |
6ff4_L | 0.0 | 2 | 797 | 3 | 802 | Cell division cycle 5-like protein |
6ff7_L | 0.0 | 2 | 797 | 3 | 802 | Cell division cycle 5-like protein |
6icz_L | 0.0 | 2 | 797 | 3 | 802 | Cell division cycle 5-like protein |
6id0_L | 0.0 | 2 | 797 | 3 | 802 | Cell division cycle 5-like protein |
6id1_L | 0.0 | 2 | 797 | 3 | 802 | Cell division cycle 5-like protein |
6qdv_O | 0.0 | 2 | 797 | 3 | 802 | Cell division cycle 5-like protein |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 185 | 204 | KRRELKAAGIDTRQRKRKRK |
2 | 199 | 204 | RKRKRK |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed extensively in shoot and root meristems. {ECO:0000269|PubMed:8917598}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00028 | SELEX | Transfer from AT1G09770 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.6G349400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007208379.1 | 0.0 | cell division cycle 5-like protein | ||||
Swissprot | P92948 | 0.0 | CDC5L_ARATH; Cell division cycle 5-like protein | ||||
TrEMBL | M5WK14 | 0.0 | M5WK14_PRUPE; Uncharacterized protein | ||||
STRING | EMJ09578 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4072 | 33 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09770.1 | 0.0 | cell division cycle 5 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.6G349400.1.p |
Entrez Gene | 18772640 |
Publications ? help Back to Top | |||
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