PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.6G340600.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family CPP
Protein Properties Length: 755aa    MW: 82350.1 Da    PI: 6.2854
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.6G340600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR47.43.7e-15486522339
                 TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                         +k+CnCk+skClk+YC+Cfaag +C e C+C++C+Nk
  Prupe.6G340600.1.p 486 CKRCNCKRSKCLKLYCDCFAAGLYCIEPCSCQECFNK 522
                         79**********************************8 PP
2TCR50.63.9e-16570609140
                 TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                         ++k+gCnC+ks ClkkYCeCf+ g+ Cs  C+C +CkN+ 
  Prupe.6G340600.1.p 570 RHKRGCNCRKSVCLKKYCECFQGGAGCSILCRCIGCKNTF 609
                         589***********************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011142.2E-16484525IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163434.388485610IPR005172CRC domain
PfamPF036387.6E-11487522IPR005172CRC domain
SMARTSM011141.0E-16570611IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.2E-11572608IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 755 aa     Download sequence    Send to blast
MDTPLKNQTT TPTTPLPSKY EDSPVFNYIS NLSPIEPVKS RGNDHTFNSL TFASLPSIFT  60
SPQNVSLGET RFSLRRHHSS EASNPESFQT PNPSDKLESV PVAVEQSYCG TKQPECFTPG  120
SSGTEVTNAI PAENLELAIE LSNTLKYSSG SPDRNVPCDA TDTVLETAAT PASLVQSVVH  180
HSEERHSSFE RETHLRRICG MEREKEAAAV DWTRLISDAS DLLNFDSTTI EESSDGEDPK  240
TVDPGAICFI SNILQDNHND MEVMESGPID SSEQYELGKF SNQSEGIGDL KETDEAPAIL  300
SRNLLDKLNV DDKCPKCIHS SCKHSSQSYA ISRRCLDFER AESHKRKSIC DTSGSYSVPL  360
QSNCEVTVVE KKLIRTTAGC DYSSSRLPGI GLHLNALATT SESNLSKVVN HETQASESQV  420
TETPNSKISS TCLTPSEVSR DESCKSEVHI AETPPEACAP VGVESDHSSP ENKRLKSQHV  480
GESLACKRCN CKRSKCLKLY CDCFAAGLYC IEPCSCQECF NKPIYENIVV EARRLIESRN  540
PLAFAPKVIG SINATPQFGE ETNSTPTSAR HKRGCNCRKS VCLKKYCECF QGGAGCSILC  600
RCIGCKNTFG RKDEAEESEI EEHKSRVRKK DAIDVSLGRV KDQDLPMTLP GICRPSGQLT  660
ASFSGKPKIF SLHSVLSSPQ PEKHLQVIPE EGTLEALDNS CSQPSGVKST SPNSKRVSPP  720
HSGSEFGSAA WRGGRKLVLR SIPPFPTLAS PRKH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A3e-1748760712120Protein lin-54 homolog
5fd3_B3e-1748760712120Protein lin-54 homolog
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.6G340600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007208201.20.0protein tesmin/TSO1-like CXC 2 isoform X1
TrEMBLA0A251NZQ10.0A0A251NZQ1_PRUPE; Uncharacterized protein
STRINGXP_008218499.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26193375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.15e-85TESMIN/TSO1-like CXC 2