PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.6G338700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | GeBP | ||||||||
Protein Properties | Length: 374aa MW: 42962.3 Da PI: 5.5359 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 88.4 | 8.9e-28 | 111 | 211 | 3 | 97 |
DUF573 3 fqrlwseeDeivlLqGlidfkaktgk..spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk....aksgkepsfskehdqk 87 +r+ws+eDe+ lL+ l+d ++g+ ++d+ fye vk +++++ ++ q+veK+rrLKkK+++ v+k ++gke++f+++hd+ Prupe.6G338700.1.p 111 RKRVWSKEDELELLRSLLDDYYSRGQirTTVKDTASFYEEVKPKLKLECNRAQMVEKLRRLKKKYHNVVNKmkdmNSTGKEFRFKNPHDKV 201 58*****************9999999877888***********************************99997777789************* PP DUF573 88 ifelskkiWg 97 +fels kiW+ Prupe.6G338700.1.p 202 VFELSDKIWN 211 *********7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 1.5E-25 | 112 | 211 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 374 aa Download sequence Send to blast |
MAWPPLLSWI LSSSSSSSSS EYESDDNNDI EDLGGINDVP DNNPKSQNDN IDDHENDDVS 60 YQPQEEDQNS NSTSDYTFTV SEPSAKRRRI DRTYKPALTS DAPEENKKRR RKRVWSKEDE 120 LELLRSLLDD YYSRGQIRTT VKDTASFYEE VKPKLKLECN RAQMVEKLRR LKKKYHNVVN 180 KMKDMNSTGK EFRFKNPHDK VVFELSDKIW NVVDSHEDYA PNSKYVSICN NVKVKKEEDN 240 VGSSSVADHE RPQMRHTWSH SRLTTTFDEN TKAHDVLNDN GTTSSLNNNN KNKNNNNNVD 300 DNMKNDIPGL IIEGLAMNPL PLSLSKFGSG VEVADEKWRK QQILELETYS KRLDLVQHQV 360 KAALDELRSK GDE* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 85 | 89 | KRRRI |
2 | 105 | 112 | NKKRRRKR |
3 | 106 | 111 | KKRRRK |
4 | 106 | 112 | KKRRRKR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.6G338700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007207963.2 | 0.0 | probable transcription factor At5g28040 | ||||
TrEMBL | A0A251P170 | 0.0 | A0A251P170_PRUPE; Uncharacterized protein | ||||
STRING | EMJ09162 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3255 | 33 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G28040.1 | 5e-31 | DNA-binding storekeeper protein-related transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | Prupe.6G338700.1.p |