PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.6G323800.2.p | ||||||||
Common Name | PRUPE_ppa000472mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | MYB_related | ||||||||
Protein Properties | Length: 1118aa MW: 124719 Da PI: 9.9384 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.3 | 3.6e-08 | 44 | 80 | 3 | 41 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqck 41 W++ E e+++da +++G++ W+++a+ + +R+ +++ Prupe.6G323800.2.p 44 EWSKGELERFYDAYRKYGKD-WRKVAAAVR-NRSIEMVE 80 7*****************99.*********.***98875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 5.9E-4 | 41 | 89 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.66E-9 | 41 | 88 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.4E-4 | 44 | 79 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 6.6E-7 | 44 | 84 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.45E-4 | 44 | 79 | No hit | No description |
SMART | SM01135 | 1.8E-59 | 645 | 746 | IPR033471 | DIRP domain |
Pfam | PF06584 | 4.2E-33 | 645 | 745 | IPR033471 | DIRP domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1118 aa Download sequence Send to blast |
MAPTKKSKSV KRYATVNEAS PEKYGGGSNK KKQRRKLSDK LGPEWSKGEL ERFYDAYRKY 60 GKDWRKVAAA VRNRSIEMVE ALYNMNRAYL SLPEGTASVV GLKAMMTDHY NVMEGSDSER 120 ESNDASGFSR KPQKRKLGKD QLSASKDVFQ SHSSASHEGC LSLLKRRRLD GGQPRAVGKR 180 TPRFPVSYAY KKDDRDTYVS PIKKGRRSEG DNDDEVAHVA ALLTEASQRG GSPQISQTPY 240 RRPVHVKSSS VQSSERMHPP RGKARANLRD PSMDEDWLEG SIGSKGAETG DYARDSLEGV 300 GTVEINWKGK KFYGKKEKAK DIGNHQFDDG GEACSGTEEG LNVSSRGKDD IEVSNTKGER 360 FSPQGQRKRS KKLYFGDESS CLDALQTLAD LSLMMPESTM ESGSSVQLKE EGTNLDVEDK 420 FSVPEATSTS QSRNKNKIPS AKHRLPFAIS GVEGTNSKKS KLGREPAFDT TAVSESEQQL 480 QSTTKTWKRK RKSSVLKISN ADAPIDSNIN EPLKIEAFGE EENKPVTKGK RTNQSSTPSK 540 QWKSTRSLEG SLNSDYRRTG TDLTATTAQA PTSNHVNLPT KRISRRKMYI PRTLHPKEKS 600 SEKKLKNQLN IRSSSAQDRA LYLKEKTSCC LSSHLVRRWC TFEWFYSALD YPWFAKREFE 660 EYLNHVGLGH IPRLTRVEWG VIRSSLGKPR RFSEHFLHEE REKLKQYRES VRKHYAELRT 720 GDREGLPTDL ARPLSVGQRV IALHPKTREV HDGSVLTVDH DKCRVQFDRP DIGVEFVMDV 780 DCMPLNPLDN MPEALRRQNF AFDKFSLTSK EANKNGNLNF GGPHLEKATS PMNTSVKQGK 840 EDSNHTTSQP KAASADIDRA QQSTYSQPGM VVAHNQARDA DIRALSELTR ALDKKVSSAL 900 LNLRQRNTYP ANSLPPWLKQ PANSTIYGGL PSSFDSSISQ ESGSSVAEIV EVSRSKAHMM 960 VNAAIQAMSS RKGGEDAYVR IREALDSIDN QHLPSDSRLS LNRSQEQVNG NLGHRNQLIS 1020 STSDPNFTSD SPGPKPNTDT EKTEAQVLSD IISACVMAVH MIQTCTERQY PPAVVAQVLD 1080 YAVTSLHPRC PQNVGIYREI QMCMGRIKTQ ILALVPT* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 129 | 136 | RKPQKRKL |
2 | 164 | 168 | KRRRL |
3 | 584 | 605 | RRKMYIPRTLHPKEKSSEKKLK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.6G323800.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020423007.1 | 0.0 | protein ALWAYS EARLY 2 isoform X6 | ||||
TrEMBL | A0A251P0B8 | 0.0 | A0A251P0B8_PRUPE; Uncharacterized protein | ||||
STRING | XP_008246389.1 | 0.0 | (Prunus mume) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21430.2 | 0.0 | DNA binding |
Link Out ? help Back to Top | |
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Phytozome | Prupe.6G323800.2.p |
Entrez Gene | 18772125 |