PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.6G312900.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family TALE
Protein Properties Length: 335aa    MW: 37686.2 Da    PI: 4.8378
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.6G312900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.55.5e-092652972355
                         SS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
            Homeobox  23 rypsaeereeLAkklgLterqVkvWFqNrRake 55 
                         +yp++ee+ +L++ +gL+++q+ +WF N+R ++
  Prupe.6G312900.1.p 265 PYPTEEEKLHLSEVTGLDQKQINNWFINQRKRH 297
                         8*****************************885 PP
2ELK36.21.3e-12217238122
                 ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                         ELK++Ll+KYsgyL +L++EF+
  Prupe.6G312900.1.p 217 ELKDMLLHKYSGYLTNLRKEFL 238
                         9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012552.6E-1672116IPR005540KNOX1
PfamPF037903.2E-1674114IPR005540KNOX1
SMARTSM012566.7E-23120171IPR005541KNOX2
PfamPF037911.0E-22123170IPR005541KNOX2
SMARTSM011883.1E-6217238IPR005539ELK domain
PROSITE profilePS5121310.807217237IPR005539ELK domain
PfamPF037893.4E-9217238IPR005539ELK domain
PROSITE profilePS5007112.309237300IPR001356Homeobox domain
SMARTSM003892.9E-12239304IPR001356Homeobox domain
SuperFamilySSF466893.38E-19239308IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.8E-26242302IPR009057Homeodomain-like
PfamPF059205.2E-16257296IPR008422Homeobox KN domain
CDDcd000869.17E-12263301No hitNo description
PROSITE patternPS000270275298IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MNMEDFYRLN PGVISGSEID VNVVHQVENM ATSTSNTSCG FHGHPHPQGH VVDDNMLLFQ  60
TEGMGSDNHM SDLIKTQIAN HPRFPDLVDA YLECQKVGAP LEMKSLLEEI GRVSHHPMST  120
CSEIGADPEL DEFMESYCEV LRGYKEELSK PFDEATNFLT NIQSQLRNLC KGTFPKTSWD  180
CNSDEGVGSS EEEFSCGEVE AAESQETAAA RAGGDRELKD MLLHKYSGYL TNLRKEFLKK  240
RKKGKLPKDA RTALLDWWTT HYRWPYPTEE EKLHLSEVTG LDQKQINNWF INQRKRHWKP  300
SEDMRFALME GVGGSIGAPM LFDAGVGTGN IDDM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1232241LRKEFLKKRK
2238242KKRKK
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Highly expressed in the early globular stage embryo before 2 days after pollination (DAP), but not in the endosperm. At 3 and 4 DAP, expression is restricted to the region around or just below the center of the ventral side of the embryo, where the shoot apex subsequently arises. During the transition to the shoot apex differentiation stage, expression is divided between the upper and basal regions of the shoot area, and the notch between the first leaf primordium and epiblast, respectively. When the first leaf primordia is evident, expression is localized to the notches between the shoot apical meristem (SAM) and the first leaf primordium and the putative second leaf primordium. Expressed uniformly in the inflorescence meristem, but after the transition from inflorescence to the floral phase, located specifically in the notches between the floral meristem and glume primordia. At later stages of flower development, uniformly expressed throughout the corpus of the meristem, and in the notches between glume primordia, but less well defined than in the previous stage. {ECO:0000269|PubMed:10488233}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during early embryogenesis. {ECO:0000269|PubMed:10488233}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.6G312900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ2817730.0GQ281773.1 Prunus persica class I KNOX homeobox transcription factor KNOPE6 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007205519.20.0homeobox protein knotted-1-like 1
SwissprotQ9FP292e-99KNOS1_ORYSJ; Homeobox protein knotted-1-like 1
TrEMBLA0A251NYA40.0A0A251NYA4_PRUPE; Uncharacterized protein
STRINGEMJ067180.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62034125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.11e-77KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Park SH, et al.
    A Ds-insertion mutant of OSH6 (Oryza sativa Homeobox 6) exhibits outgrowth of vestigial leaf-like structures, bracts, in rice.
    Planta, 2007. 227(1): p. 1-12
    [PMID:17624547]