PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.6G300900.1.p
Common NamePRUPE_ppa001546mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family GRAS
Protein Properties Length: 850aa    MW: 91964.8 Da    PI: 6.814
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.6G300900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS416.22.9e-1274778362374
                GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                          +lLl+cAeavs++++ +a+++L ++sel++p g++ qR+aayf eA++arl++s+ ++y++lpps  + +++++ ++a+++f+ +sP++k
  Prupe.6G300900.1.p 477 LTLLLQCAEAVSADNFDEATKILLEISELSTPFGTSAQRVAAYFSEAMSARLVSSCLGIYASLPPSYVPISHTQKMVSAFQVFNGISPFVK 567
                         579**************************************************************************************** PP

                GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlva 183
                         fsh+taNqaI ea+e+e+rvHi+D+di+qGlQWp L++ LasRp+gpp +R+Tg+g     s e+le+tg+rL++fA++lg+pfef + va
  Prupe.6G300900.1.p 568 FSHFTANQAIQEAFEREDRVHIVDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGT----SMEALEATGKRLSDFADKLGLPFEFFP-VA 653
                         *********************************************************....***************************.7* PP

                GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak 274
                         +++ +l++e+L+++++Ea+aV++    h+l+d ++s ++    +L+l+++l Pkvv+vveq+++h ++sFl rf+ea++yysalfdsl a+
  Prupe.6G300900.1.p 654 EKVGSLDPERLNISKREAVAVHWLQ--HSLYDVTGSDSN----TLWLLQRLAPKVVTVVEQDLSH-AGSFLGRFVEAIHYYSALFDSLGAS 737
                         ************************9..999999999999....**********************.899********************** PP

                GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdr 365
                         +++eseer++vE++ll+rei+nv+a  g +r  + + +++Wre+++++GF+ ++l  +aa+qa lll +++sdgy++ e++g+l lgWkd 
  Prupe.6G300900.1.p 738 YGEESEERHVVEQQLLSREIRNVLAVGGPSRSGEVK-FHNWREKFQQSGFRGISLAGNAATQATLLLGMFPSDGYTLVEDNGTLKLGWKDL 827
                         ******************************888776.****************************************************** PP

                GRAS 366 pLvsvSaWr 374
                          L+++SaWr
  Prupe.6G300900.1.p 828 CLLTASAWR 836
                         ********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098561.909450816IPR005202Transcription factor GRAS
PfamPF035141.0E-124477836IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008356Biological Processasymmetric cell division
GO:0009630Biological Processgravitropism
GO:0009956Biological Processradial pattern formation
GO:0048366Biological Processleaf development
GO:0051457Biological Processmaintenance of protein location in nucleus
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 850 aa     Download sequence    Send to blast
MAACALLGDH NGEHISGNGS SNNNSHGGGS PSCPMTSTTN SNSQGSSVEQ QPPRQHQNQQ  60
QHQRHSTEGS KMVRKRMACE IEVQNYPTSR NTSASDYMRL SRRSSSIINN NPNPNATKVN  120
NNSMVYPNYS TMLLPVPSST NLTTLTSAGG ALSPASASAS SAAASAANWG PIDPLSLHPH  180
HQSGALPSHQ LQLQPKTLTP AVCGFSGLPL FPPEKTPPSN QSTATPSSIS ISMEDSSSAT  240
AWIDGIIKDL IHSSTNVSIP QLIHNVREII FPCNPNLASL LEYRLRSISE PPPPPPPIPN  300
FNPATVPELR RRRETLQLQQ QQNQHHHHHQ GPGALKLNLD SAALHDVAIF TNPTTVETAS  360
VATHVMNSND LYLHSWTGGG GGAGPTPITC SQTNPHHPNS PFNQAIHHTQ DKQLENSSSS  420
SPAAESTTPT AAPATTTTAT TTPTPPPTTP SAAVSLIRER KEEMRQQKRD EEGLHLLTLL  480
LQCAEAVSAD NFDEATKILL EISELSTPFG TSAQRVAAYF SEAMSARLVS SCLGIYASLP  540
PSYVPISHTQ KMVSAFQVFN GISPFVKFSH FTANQAIQEA FEREDRVHIV DLDIMQGLQW  600
PGLFHILASR PGGPPYVRLT GLGTSMEALE ATGKRLSDFA DKLGLPFEFF PVAEKVGSLD  660
PERLNISKRE AVAVHWLQHS LYDVTGSDSN TLWLLQRLAP KVVTVVEQDL SHAGSFLGRF  720
VEAIHYYSAL FDSLGASYGE ESEERHVVEQ QLLSREIRNV LAVGGPSRSG EVKFHNWREK  780
FQQSGFRGIS LAGNAATQAT LLLGMFPSDG YTLVEDNGTL KLGWKDLCLL TASAWRPPFH  840
ATTNPNLHY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A0.04608373380Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.6G300900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020422590.10.0protein SCARECROW
TrEMBLA0A251NXN60.0A0A251NXN6_PRUPE; Uncharacterized protein
STRINGXP_008244193.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20683489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.10.0GRAS family protein