PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.6G293400.7.p | ||||||||
Common Name | PRUPE_ppa001234mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | B3 | ||||||||
Protein Properties | Length: 797aa MW: 87659.6 Da PI: 6.8128 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 56 | 7.1e-18 | 252 | 351 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+k l+ sd+++ grlvlpk +ae++ ++++e+ l+++d +g++W +++++ +++s++yvl+ G ++ +L++gD+v+F++++ Prupe.6G293400.7.p 252 FEKMLSASDAGRIGRLVLPKACAEAYfpPISQPEGLPLRIQDVKGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRMD- 340 89**************************555567778***************9989999999***9.********************876. PP SEE..EEEEE- CS B3 88 sefelvvkvfr 98 e++l +++++ Prupe.6G293400.7.p 341 PEGKLIMGFRK 351 77777777766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 4.9E-29 | 244 | 355 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 7.59E-19 | 249 | 351 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.21E-21 | 250 | 351 | No hit | No description |
PROSITE profile | PS50863 | 11.138 | 252 | 353 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.1E-15 | 252 | 351 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.8E-19 | 252 | 353 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS51050 | 14.286 | 481 | 531 | IPR011124 | Zinc finger, CW-type |
Pfam | PF07496 | 1.2E-12 | 486 | 528 | IPR011124 | Zinc finger, CW-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010030 | Biological Process | positive regulation of seed germination | ||||
GO:2000034 | Biological Process | regulation of seed maturation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 797 aa Download sequence Send to blast |
MFLLDLLDGG GVKCIKCAKS SEPQPILSDE KPDGLGISKI SELQPTAQDN QLDGTNVEKL 60 KLIQLGNNKD CNGFRNLLQF QNNDANGLLQ KMKHADTPPP VGEIGGTCLS NFNLASNGSS 120 EAPKAEVFKA NLGINDIYDS LPQTNLSMSL GAPLGKANPV PAAIFDEREH SKTSSPLLPG 180 ARSRNLFPKP PKLALGAGLE ENSTIASHAR VARPPAEGRG RNQLLPRYWP RITDQELQQI 240 SGDSNSTIVP LFEKMLSASD AGRIGRLVLP KACAEAYFPP ISQPEGLPLR IQDVKGKEWV 300 FQFRFWPNNN SRMYVLEGVT PCIQSMQLQA GDTVTFSRMD PEGKLIMGFR KASNSVAMQS 360 LKGSMDPHLN ALSKHLTTAS GDISWHKSEK QEGRTREGML LPSLLVPERK RTRNIGSKSK 420 RLLIDSQDAL ELKLTWEEAQ DLLRPPPAAK PSTIMIEDLE FEEYEEPPVF GKRSIFIVRS 480 TGEHEQWAQC DSCSKWRRLP VDVLLPSKWT CADNAWDQSR RSCSAPDELA PRELESFLRL 540 SKEFKKRRTV ADNRPTQEHE SSGLDALANA AILGDNAADP GTASVATTTK HPRHRPGCSC 600 IVCIQPPSGK GKHKPNCTCN VCNTVKRRFK TLMINKKKRQ SEREAEIAYR NQHAWGPRDE 660 AEVDSTSRHV SSHVDPSDNE ARSANESDSK SQSKVAETGK GILDLNCHPG REGELQAGPD 720 HVSMMSLVQV ASLPLETYLK HNGLTSLMSE QQATSSTSHV PPQATNESED QHNENQCQEQ 780 ESGGEERPDQ GQDDPL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9a_A | 2e-70 | 230 | 359 | 2 | 131 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppe.5913 | 4e-67 | fruit |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor of gene expression involved in embryonic pathways, such as LEC1, ABI3, and FUS3. Repressor of the sugar-inducible genes involved in the seed maturation program in seedlings. Plays an essential role in regulating the transition from seed maturation to seedling growth. Functionally redundant with VAL1/HSI2. {ECO:0000269|PubMed:17158584, ECO:0000269|PubMed:17267611}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.6G293400.7.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020420750.1 | 0.0 | B3 domain-containing transcription repressor VAL2 isoform X3 | ||||
Swissprot | Q5CCK4 | 0.0 | VAL2_ARATH; B3 domain-containing transcription repressor VAL2 | ||||
TrEMBL | A0A251NYV8 | 0.0 | A0A251NYV8_PRUPE; Uncharacterized protein | ||||
STRING | XP_008244859.1 | 0.0 | (Prunus mume) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32010.1 | 0.0 | HSI2-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.6G293400.7.p |
Entrez Gene | 18772013 |
Publications ? help Back to Top | |||
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