PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.6G293400.5.p
Common NamePRUPE_ppa001234mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 742aa    MW: 81603.6 Da    PI: 6.8152
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.6G293400.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.26.4e-18161260198
                         EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                         f+k l+ sd+++ grlvlpk +ae++   ++++e+  l+++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++ 
  Prupe.6G293400.5.p 161 FEKMLSASDAGRIGRLVLPKACAEAYfpPISQPEGLPLRIQDVKGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRMD- 249
                         89**************************555567778***************9989999999***9.********************876. PP

                         SEE..EEEEE- CS
                  B3  88 sefelvvkvfr 98 
                          e++l +++++
  Prupe.6G293400.5.p 250 PEGKLIMGFRK 260
                         77777777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.2E-29153263IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.06E-19158260IPR015300DNA-binding pseudobarrel domain
CDDcd100171.04E-21159260No hitNo description
PfamPF023621.9E-15161260IPR003340B3 DNA binding domain
PROSITE profilePS5086311.138161262IPR003340B3 DNA binding domain
SMARTSM010191.8E-19161262IPR003340B3 DNA binding domain
PROSITE profilePS5105014.286426476IPR011124Zinc finger, CW-type
PfamPF074961.1E-12431473IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010030Biological Processpositive regulation of seed germination
GO:2000034Biological Processregulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 742 aa     Download sequence    Send to blast
MKHADTPPPV GEIGGTCLSN FNLASNGSSE APKAEVFKAN LGINDIYDSL PQTNLSMSLG  60
APLGKANPVP AAIFDEREHS KTSSPLLPGA RSRNLFPKPP KLALGAGLEE NSTIASHARV  120
ARPPAEGRGR NQLLPRYWPR ITDQELQQIS GDSNSTIVPL FEKMLSASDA GRIGRLVLPK  180
ACAEAYFPPI SQPEGLPLRI QDVKGKEWVF QFRFWPNNNS RMYVLEGVTP CIQSMQLQAG  240
DTVTFSRMDP EGKLIMGFRK ASNSVAMQDT HLTAIHNGAH SSETFFSGVF ENLPVISGYP  300
GLLQSLKGSM DPHLNALSKH LTTASGDISW HKSEKQEGRT REGMLLPSLL VPERKRTRNI  360
GSKSKRLLID SQDALELKLT WEEAQDLLRP PPAAKPSTIM IEDLEFEEYE EPPVFGKRSI  420
FIVRSTGEHE QWAQCDSCSK WRRLPVDVLL PSKWTCADNA WDQSRRSCSA PDELAPRELE  480
SFLRLSKEFK KRRTVADNRP TQEHESSGLD ALANAAILGD NAADPGTASV ATTTKHPRHR  540
PGCSCIVCIQ PPSGKGKHKP NCTCNVCNTV KRRFKTLMIN KKKRQSEREA EIAYRNQHAW  600
GPRDEAEVDS TSRHVSSHVD PSDNEARSAN ESDSKSQSKV AETGKGILDL NCHPGREGEL  660
QAGPDHVSMM SLVQVASLPL ETYLKHNGLT SLMSEQQATS STSHVPPQAT NESEDQHNEN  720
QCQEQESGGE ERPDQGQDDP L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A5e-711392682131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppe.59133e-67fruit
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.6G293400.5.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020420751.10.0B3 domain-containing protein Os07g0679700 isoform X4
SwissprotQ6Z3U30.0Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBLA0A251NXD00.0A0A251NXD0_PRUPE; Uncharacterized protein
TrEMBLA0A251NXF30.0A0A251NXF3_PRUPE; Uncharacterized protein
STRINGXP_008244859.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.10.0HSI2-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]