PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.6G293400.4.p
Common NamePRUPE_ppa001234mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 706aa    MW: 77764.4 Da    PI: 7.018
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.6G293400.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.35.9e-18161260198
                         EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                         f+k l+ sd+++ grlvlpk +ae++   ++++e+  l+++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++ 
  Prupe.6G293400.4.p 161 FEKMLSASDAGRIGRLVLPKACAEAYfpPISQPEGLPLRIQDVKGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRMD- 249
                         89**************************555567778***************9989999999***9.********************876. PP

                         SEE..EEEEE- CS
                  B3  88 sefelvvkvfr 98 
                          e++l +++++
  Prupe.6G293400.4.p 250 PEGKLIMGFRK 260
                         77777777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.1E-29153264IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.41E-19158260IPR015300DNA-binding pseudobarrel domain
CDDcd100179.36E-22159260No hitNo description
PROSITE profilePS5086311.138161262IPR003340B3 DNA binding domain
SMARTSM010191.8E-19161262IPR003340B3 DNA binding domain
PfamPF023621.7E-15161260IPR003340B3 DNA binding domain
PROSITE profilePS5105014.286390440IPR011124Zinc finger, CW-type
PfamPF074961.0E-12395437IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010030Biological Processpositive regulation of seed germination
GO:2000034Biological Processregulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 706 aa     Download sequence    Send to blast
MKHADTPPPV GEIGGTCLSN FNLASNGSSE APKAEVFKAN LGINDIYDSL PQTNLSMSLG  60
APLGKANPVP AAIFDEREHS KTSSPLLPGA RSRNLFPKPP KLALGAGLEE NSTIASHARV  120
ARPPAEGRGR NQLLPRYWPR ITDQELQQIS GDSNSTIVPL FEKMLSASDA GRIGRLVLPK  180
ACAEAYFPPI SQPEGLPLRI QDVKGKEWVF QFRFWPNNNS RMYVLEGVTP CIQSMQLQAG  240
DTVTFSRMDP EGKLIMGFRK ASNSVAMQSL KGSMDPHLNA LSKHLTTASG DISWHKSEKQ  300
EGRTREGMLL PSLLVPERKR TRNIGSKSKR LLIDSQDALE LKLTWEEAQD LLRPPPAAKP  360
STIMIEDLEF EEYEEPPVFG KRSIFIVRST GEHEQWAQCD SCSKWRRLPV DVLLPSKWTC  420
ADNAWDQSRR SCSAPDELAP RELESFLRLS KEFKKRRTVA DNRPTQEHES SGLDALANAA  480
ILGDNAADPG TASVATTTKH PRHRPGCSCI VCIQPPSGKG KHKPNCTCNV CNTVKRRFKT  540
LMINKKKRQS EREAEIAYRN QHAWGPRDEA EVDSTSRHVS SHVDPSDNEA RSANESDSKS  600
QSKVAETGKG ILDLNCHPGR EGELQAGPDH VSMMSLVQVA SLPLETYLKH NGLTSLMSEQ  660
QATSSTSHVP PQATNESEDQ HNENQCQEQE SGGEERPDQG QDDPL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A3e-711392682131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppe.59133e-67fruit
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor of gene expression involved in embryonic pathways, such as LEC1, ABI3, and FUS3. Repressor of the sugar-inducible genes involved in the seed maturation program in seedlings. Plays an essential role in regulating the transition from seed maturation to seedling growth. Functionally redundant with VAL1/HSI2. {ECO:0000269|PubMed:17158584, ECO:0000269|PubMed:17267611}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.6G293400.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020420750.10.0B3 domain-containing transcription repressor VAL2 isoform X3
SwissprotQ5CCK40.0VAL2_ARATH; B3 domain-containing transcription repressor VAL2
TrEMBLA0A251NXC30.0A0A251NXC3_PRUPE; Uncharacterized protein
STRINGXP_008244859.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.10.0HSI2-like 1
Publications ? help Back to Top
  1. Jia H,McCarty DR,Suzuki M
    Distinct roles of LAFL network genes in promoting the embryonic seedling fate in the absence of VAL repression.
    Plant Physiol., 2013. 163(3): p. 1293-305
    [PMID:24043445]
  2. Chhun T, et al.
    HSI2 Repressor Recruits MED13 and HDA6 to Down-Regulate Seed Maturation Gene Expression Directly During Arabidopsis Early Seedling Growth.
    Plant Cell Physiol., 2016. 57(8): p. 1689-706
    [PMID:27335347]
  3. Yuan W, et al.
    A cis cold memory element and a trans epigenome reader mediate Polycomb silencing of FLC by vernalization in Arabidopsis.
    Nat. Genet., 2016. 48(12): p. 1527-1534
    [PMID:27819666]
  4. Li C,Cui Y
    A DNA element that remembers winter.
    Nat. Genet., 2016. 48(12): p. 1451-1452
    [PMID:27898079]