PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.6G293400.17.p
Common NamePRUPE_ppa001234mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 799aa    MW: 87984.7 Da    PI: 8.0731
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.6G293400.17.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3567.1e-18326425198
                          EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                          f+k l+ sd+++ grlvlpk +ae++   ++++e+  l+++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++
  Prupe.6G293400.17.p 326 FEKMLSASDAGRIGRLVLPKACAEAYfpPISQPEGLPLRIQDVKGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRMD 414
                          89**************************555567778***************9989999999***9.********************876 PP

                          SSEE..EEEEE- CS
                   B3  87 rsefelvvkvfr 98 
                            e++l +++++
  Prupe.6G293400.17.p 415 -PEGKLIMGFRK 425
                          .77777777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.9E-29318429IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.59E-19323425IPR015300DNA-binding pseudobarrel domain
CDDcd100171.22E-21324425No hitNo description
PROSITE profilePS5086311.138326427IPR003340B3 DNA binding domain
PfamPF023622.1E-15326425IPR003340B3 DNA binding domain
SMARTSM010191.8E-19326427IPR003340B3 DNA binding domain
PROSITE profilePS5105014.286555605IPR011124Zinc finger, CW-type
PfamPF074961.2E-12560602IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010030Biological Processpositive regulation of seed germination
GO:2000034Biological Processregulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 799 aa     Download sequence    Send to blast
MEPRTCVNSA CGTSSSIEWK KGWALRSGGF ANLCPKCWSA YEQSIFCDIF HSKESGWREC  60
ILCGKRLHCG CIASMFLLDL LDGGGVKCIK CAKSSEPQPI LSDEKPDGLG ISKISELQPT  120
AQDNQLDGTN VEKLKLIQLG NNKDCNGFRN LLQFQNNDAN GLLQKMKHAD TPPPVGEIGG  180
TCLSNFNLAS NGSSEAPKAE VFKANLGIND IYDSLPQTNL SMSLGAPLGK ANPVPAAIFD  240
EREHSKTSSP LLPGARSRNL FPKPPKLALG AGLEENSTIA SHARVARPPA EGRGRNQLLP  300
RYWPRITDQE LQQISGDSNS TIVPLFEKML SASDAGRIGR LVLPKACAEA YFPPISQPEG  360
LPLRIQDVKG KEWVFQFRFW PNNNSRMYVL EGVTPCIQSM QLQAGDTVTF SRMDPEGKLI  420
MGFRKASNSV AMQSLKGSMD PHLNALSKHL TTASGDISWH KSEKQEGRTR EGMLLPSLLV  480
PERKRTRNIG SKSKRLLIDS QDALELKLTW EEAQDLLRPP PAAKPSTIMI EDLEFEEYEE  540
PPVFGKRSIF IVRSTGEHEQ WAQCDSCSKW RRLPVDVLLP SKWTCADNAW DQSRRSCSAP  600
DELAPRELES FLRLSKEFKK RRTVADNRPT QEHESSGLDA LANAAILGDN AADPGTASVA  660
TTTKHPRHRP GCSCIVCIQP PSGKGKHKPN CTCNVCNTVK RRFKTLMINK KKRQSEREAE  720
IAYRNQHAWG PRDEAEVDST SRHVSSHVDP SDNEARSANE SDSKSQSKVA ETGKGILDLN  780
CHPGREGELQ AGPDHLDV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A5e-703044332131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor of gene expression involved in embryonic pathways, such as LEC1, ABI3, and FUS3. Repressor of the sugar-inducible genes involved in the seed maturation program in seedlings. Plays an essential role in regulating the transition from seed maturation to seedling growth. Functionally redundant with VAL1/HSI2. {ECO:0000269|PubMed:17158584, ECO:0000269|PubMed:17267611}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.6G293400.17.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020420750.10.0B3 domain-containing transcription repressor VAL2 isoform X3
SwissprotQ5CCK40.0VAL2_ARATH; B3 domain-containing transcription repressor VAL2
TrEMBLA0A251NXD70.0A0A251NXD7_PRUPE; Uncharacterized protein
STRINGEMJ095610.0(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.10.0HSI2-like 1
Publications ? help Back to Top
  1. Jia H,McCarty DR,Suzuki M
    Distinct roles of LAFL network genes in promoting the embryonic seedling fate in the absence of VAL repression.
    Plant Physiol., 2013. 163(3): p. 1293-305
    [PMID:24043445]
  2. Chhun T, et al.
    HSI2 Repressor Recruits MED13 and HDA6 to Down-Regulate Seed Maturation Gene Expression Directly During Arabidopsis Early Seedling Growth.
    Plant Cell Physiol., 2016. 57(8): p. 1689-706
    [PMID:27335347]
  3. Yuan W, et al.
    A cis cold memory element and a trans epigenome reader mediate Polycomb silencing of FLC by vernalization in Arabidopsis.
    Nat. Genet., 2016. 48(12): p. 1527-1534
    [PMID:27819666]
  4. Li C,Cui Y
    A DNA element that remembers winter.
    Nat. Genet., 2016. 48(12): p. 1451-1452
    [PMID:27898079]