PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.6G293400.16.p
Common NamePRUPE_ppa001234mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 761aa    MW: 83618.5 Da    PI: 7.6517
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.6G293400.16.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.16.6e-18252351198
                          EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                          f+k l+ sd+++ grlvlpk +ae++   ++++e+  l+++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++
  Prupe.6G293400.16.p 252 FEKMLSASDAGRIGRLVLPKACAEAYfpPISQPEGLPLRIQDVKGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRMD 340
                          89**************************555567778***************9989999999***9.********************876 PP

                          SSEE..EEEEE- CS
                   B3  87 rsefelvvkvfr 98 
                            e++l +++++
  Prupe.6G293400.16.p 341 -PEGKLIMGFRK 351
                          .77777777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.4E-29244354IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.32E-19249351IPR015300DNA-binding pseudobarrel domain
CDDcd100171.10E-21250351No hitNo description
PROSITE profilePS5086311.138252353IPR003340B3 DNA binding domain
PfamPF023621.9E-15252351IPR003340B3 DNA binding domain
SMARTSM010191.8E-19252353IPR003340B3 DNA binding domain
PROSITE profilePS5105014.286517567IPR011124Zinc finger, CW-type
PfamPF074961.1E-12522564IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010030Biological Processpositive regulation of seed germination
GO:2000034Biological Processregulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 761 aa     Download sequence    Send to blast
MFLLDLLDGG GVKCIKCAKS SEPQPILSDE KPDGLGISKI SELQPTAQDN QLDGTNVEKL  60
KLIQLGNNKD CNGFRNLLQF QNNDANGLLQ KMKHADTPPP VGEIGGTCLS NFNLASNGSS  120
EAPKAEVFKA NLGINDIYDS LPQTNLSMSL GAPLGKANPV PAAIFDEREH SKTSSPLLPG  180
ARSRNLFPKP PKLALGAGLE ENSTIASHAR VARPPAEGRG RNQLLPRYWP RITDQELQQI  240
SGDSNSTIVP LFEKMLSASD AGRIGRLVLP KACAEAYFPP ISQPEGLPLR IQDVKGKEWV  300
FQFRFWPNNN SRMYVLEGVT PCIQSMQLQA GDTVTFSRMD PEGKLIMGFR KASNSVAMQD  360
THLTAIHNGA HSSETFFSGV FENLPVISGY PGLLQSLKGS MDPHLNALSK HLTTASGDIS  420
WHKSEKQEGR TREGMLLPSL LVPERKRTRN IGSKSKRLLI DSQDALELKL TWEEAQDLLR  480
PPPAAKPSTI MIEDLEFEEY EEPPVFGKRS IFIVRSTGEH EQWAQCDSCS KWRRLPVDVL  540
LPSKWTCADN AWDQSRRSCS APDELAPREL ESFLRLSKEF KKRRTVADNR PTQEHESSGL  600
DALANAAILG DNAADPGTAS VATTTKHPRH RPGCSCIVCI QPPSGKGKHK PNCTCNVCNT  660
VKRRFKTLMI NKKKRQSERE AEIAYRNQHA WGPRDEAEVD STSRHVSSHV DPSDNEARSA  720
NESDSKSQSK VAETGKGILD LNCHPGREGE LQAGPDHLDV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A2e-702303592131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.6G293400.16.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020420749.10.0B3 domain-containing transcription repressor VAL2 isoform X1
SwissprotQ6Z3U30.0Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBLA0A251NYW50.0A0A251NYW5_PRUPE; Uncharacterized protein
STRINGEMJ095610.0(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.10.0HSI2-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]