PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.6G293400.15.p
Common NamePRUPE_ppa001234mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 770aa    MW: 84689 Da    PI: 8.0989
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.6G293400.15.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.16.7e-18261360198
                          EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                          f+k l+ sd+++ grlvlpk +ae++   ++++e+  l+++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++
  Prupe.6G293400.15.p 261 FEKMLSASDAGRIGRLVLPKACAEAYfpPISQPEGLPLRIQDVKGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRMD 349
                          89**************************555567778***************9989999999***9.********************876 PP

                          SSEE..EEEEE- CS
                   B3  87 rsefelvvkvfr 98 
                            e++l +++++
  Prupe.6G293400.15.p 350 -PEGKLIMGFRK 360
                          .77777777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.5E-29253363IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.46E-19258360IPR015300DNA-binding pseudobarrel domain
CDDcd100171.13E-21259360No hitNo description
PfamPF023622.0E-15261360IPR003340B3 DNA binding domain
SMARTSM010191.8E-19261362IPR003340B3 DNA binding domain
PROSITE profilePS5086311.138261362IPR003340B3 DNA binding domain
PROSITE profilePS5105014.286526576IPR011124Zinc finger, CW-type
PfamPF074961.1E-12531573IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010030Biological Processpositive regulation of seed germination
GO:2000034Biological Processregulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 770 aa     Download sequence    Send to blast
MEPRTCVNSA CGTSSSIEWK KGWALRSGGF ANLCPKCWSA YEQSIFCDIF HSKESGWREC  60
ILCGKRLHCG CIASMFLLDL LDGGGVKCIK CAKSSEPQPK MKHADTPPPV GEIGGTCLSN  120
FNLASNGSSE APKAEVFKAN LGINDIYDSL PQTNLSMSLG APLGKANPVP AAIFDEREHS  180
KTSSPLLPGA RSRNLFPKPP KLALGAGLEE NSTIASHARV ARPPAEGRGR NQLLPRYWPR  240
ITDQELQQIS GDSNSTIVPL FEKMLSASDA GRIGRLVLPK ACAEAYFPPI SQPEGLPLRI  300
QDVKGKEWVF QFRFWPNNNS RMYVLEGVTP CIQSMQLQAG DTVTFSRMDP EGKLIMGFRK  360
ASNSVAMQDT HLTAIHNGAH SSETFFSGVF ENLPVISGYP GLLQSLKGSM DPHLNALSKH  420
LTTASGDISW HKSEKQEGRT REGMLLPSLL VPERKRTRNI GSKSKRLLID SQDALELKLT  480
WEEAQDLLRP PPAAKPSTIM IEDLEFEEYE EPPVFGKRSI FIVRSTGEHE QWAQCDSCSK  540
WRRLPVDVLL PSKWTCADNA WDQSRRSCSA PDELAPRELE SFLRLSKEFK KRRTVADNRP  600
TQEHESSGLD ALANAAILGD NAADPGTASV ATTTKHPRHR PGCSCIVCIQ PPSGKGKHKP  660
NCTCNVCNTV KRRFKTLMIN KKKRQSEREA EIAYRNQHAW GPRDEAEVDS TSRHVSSHVD  720
PSDNEARSAN ESDSKSQSKV AETGKGILDL NCHPGREGEL QAGPDHLDV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A3e-702393682131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor of gene expression involved in embryonic pathways, such as LEC1, ABI3, and FUS3. Repressor of the sugar-inducible genes involved in the seed maturation program in seedlings. Plays an essential role in regulating the transition from seed maturation to seedling growth. Functionally redundant with VAL1/HSI2. {ECO:0000269|PubMed:17158584, ECO:0000269|PubMed:17267611}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.6G293400.15.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020420751.10.0B3 domain-containing protein Os07g0679700 isoform X4
SwissprotQ5CCK40.0VAL2_ARATH; B3 domain-containing transcription repressor VAL2
TrEMBLA0A251NXE70.0A0A251NXE7_PRUPE; Uncharacterized protein
STRINGEMJ095610.0(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.10.0HSI2-like 1
Publications ? help Back to Top
  1. Jia H,McCarty DR,Suzuki M
    Distinct roles of LAFL network genes in promoting the embryonic seedling fate in the absence of VAL repression.
    Plant Physiol., 2013. 163(3): p. 1293-305
    [PMID:24043445]
  2. Chhun T, et al.
    HSI2 Repressor Recruits MED13 and HDA6 to Down-Regulate Seed Maturation Gene Expression Directly During Arabidopsis Early Seedling Growth.
    Plant Cell Physiol., 2016. 57(8): p. 1689-706
    [PMID:27335347]
  3. Yuan W, et al.
    A cis cold memory element and a trans epigenome reader mediate Polycomb silencing of FLC by vernalization in Arabidopsis.
    Nat. Genet., 2016. 48(12): p. 1527-1534
    [PMID:27819666]
  4. Li C,Cui Y
    A DNA element that remembers winter.
    Nat. Genet., 2016. 48(12): p. 1451-1452
    [PMID:27898079]