PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.6G293400.13.p
Common NamePRUPE_ppa001234mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 725aa    MW: 79779.2 Da    PI: 8.0099
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.6G293400.13.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.26.2e-18252351198
                          EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                          f+k l+ sd+++ grlvlpk +ae++   ++++e+  l+++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++
  Prupe.6G293400.13.p 252 FEKMLSASDAGRIGRLVLPKACAEAYfpPISQPEGLPLRIQDVKGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRMD 340
                          89**************************555567778***************9989999999***9.********************876 PP

                          SSEE..EEEEE- CS
                   B3  87 rsefelvvkvfr 98 
                            e++l +++++
  Prupe.6G293400.13.p 341 -PEGKLIMGFRK 351
                          .77777777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.2E-29244355IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.67E-19249351IPR015300DNA-binding pseudobarrel domain
CDDcd100179.94E-22250351No hitNo description
PROSITE profilePS5086311.138252353IPR003340B3 DNA binding domain
PfamPF023621.8E-15252351IPR003340B3 DNA binding domain
SMARTSM010191.8E-19252353IPR003340B3 DNA binding domain
PROSITE profilePS5105014.286481531IPR011124Zinc finger, CW-type
PfamPF074961.1E-12486528IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010030Biological Processpositive regulation of seed germination
GO:2000034Biological Processregulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 725 aa     Download sequence    Send to blast
MFLLDLLDGG GVKCIKCAKS SEPQPILSDE KPDGLGISKI SELQPTAQDN QLDGTNVEKL  60
KLIQLGNNKD CNGFRNLLQF QNNDANGLLQ KMKHADTPPP VGEIGGTCLS NFNLASNGSS  120
EAPKAEVFKA NLGINDIYDS LPQTNLSMSL GAPLGKANPV PAAIFDEREH SKTSSPLLPG  180
ARSRNLFPKP PKLALGAGLE ENSTIASHAR VARPPAEGRG RNQLLPRYWP RITDQELQQI  240
SGDSNSTIVP LFEKMLSASD AGRIGRLVLP KACAEAYFPP ISQPEGLPLR IQDVKGKEWV  300
FQFRFWPNNN SRMYVLEGVT PCIQSMQLQA GDTVTFSRMD PEGKLIMGFR KASNSVAMQS  360
LKGSMDPHLN ALSKHLTTAS GDISWHKSEK QEGRTREGML LPSLLVPERK RTRNIGSKSK  420
RLLIDSQDAL ELKLTWEEAQ DLLRPPPAAK PSTIMIEDLE FEEYEEPPVF GKRSIFIVRS  480
TGEHEQWAQC DSCSKWRRLP VDVLLPSKWT CADNAWDQSR RSCSAPDELA PRELESFLRL  540
SKEFKKRRTV ADNRPTQEHE SSGLDALANA AILGDNAADP GTASVATTTK HPRHRPGCSC  600
IVCIQPPSGK GKHKPNCTCN VCNTVKRRFK TLMINKKKRQ SEREAEIAYR NQHAWGPRDE  660
AEVDSTSRHV SSHVDPSDNE ARSANESDSK SQSKVAETGK GILDLNCHPG REGELQAGPD  720
HLDV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A9e-712303592131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor of gene expression involved in embryonic pathways, such as LEC1, ABI3, and FUS3. Repressor of the sugar-inducible genes involved in the seed maturation program in seedlings. Plays an essential role in regulating the transition from seed maturation to seedling growth. Functionally redundant with VAL1/HSI2. {ECO:0000269|PubMed:17158584, ECO:0000269|PubMed:17267611}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.6G293400.13.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020420750.10.0B3 domain-containing transcription repressor VAL2 isoform X3
SwissprotQ5CCK40.0VAL2_ARATH; B3 domain-containing transcription repressor VAL2
TrEMBLA0A251NXD90.0A0A251NXD9_PRUPE; Uncharacterized protein
STRINGEMJ095610.0(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.10.0HSI2-like 1
Publications ? help Back to Top
  1. Jia H,McCarty DR,Suzuki M
    Distinct roles of LAFL network genes in promoting the embryonic seedling fate in the absence of VAL repression.
    Plant Physiol., 2013. 163(3): p. 1293-305
    [PMID:24043445]
  2. Chhun T, et al.
    HSI2 Repressor Recruits MED13 and HDA6 to Down-Regulate Seed Maturation Gene Expression Directly During Arabidopsis Early Seedling Growth.
    Plant Cell Physiol., 2016. 57(8): p. 1689-706
    [PMID:27335347]
  3. Yuan W, et al.
    A cis cold memory element and a trans epigenome reader mediate Polycomb silencing of FLC by vernalization in Arabidopsis.
    Nat. Genet., 2016. 48(12): p. 1527-1534
    [PMID:27819666]
  4. Li C,Cui Y
    A DNA element that remembers winter.
    Nat. Genet., 2016. 48(12): p. 1451-1452
    [PMID:27898079]