PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.6G293400.10.p | ||||||||
Common Name | PRUPE_ppa001234mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | B3 | ||||||||
Protein Properties | Length: 811aa MW: 89151.4 Da PI: 7.258 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 56 | 7.2e-18 | 261 | 360 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f+k l+ sd+++ grlvlpk +ae++ ++++e+ l+++d +g++W +++++ +++s++yvl+ G ++ +L++gD+v+F++++ Prupe.6G293400.10.p 261 FEKMLSASDAGRIGRLVLPKACAEAYfpPISQPEGLPLRIQDVKGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRMD 349 89**************************555567778***************9989999999***9.********************876 PP SSEE..EEEEE- CS B3 87 rsefelvvkvfr 98 e++l +++++ Prupe.6G293400.10.p 350 -PEGKLIMGFRK 360 .77777777766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 6.0E-29 | 253 | 363 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 8.11E-19 | 258 | 360 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.25E-21 | 259 | 360 | No hit | No description |
Pfam | PF02362 | 2.1E-15 | 261 | 360 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.8E-19 | 261 | 362 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.138 | 261 | 362 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS51050 | 14.286 | 526 | 576 | IPR011124 | Zinc finger, CW-type |
Pfam | PF07496 | 1.2E-12 | 531 | 573 | IPR011124 | Zinc finger, CW-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010030 | Biological Process | positive regulation of seed germination | ||||
GO:2000034 | Biological Process | regulation of seed maturation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 811 aa Download sequence Send to blast |
MEPRTCVNSA CGTSSSIEWK KGWALRSGGF ANLCPKCWSA YEQSIFCDIF HSKESGWREC 60 ILCGKRLHCG CIASMFLLDL LDGGGVKCIK CAKSSEPQPK MKHADTPPPV GEIGGTCLSN 120 FNLASNGSSE APKAEVFKAN LGINDIYDSL PQTNLSMSLG APLGKANPVP AAIFDEREHS 180 KTSSPLLPGA RSRNLFPKPP KLALGAGLEE NSTIASHARV ARPPAEGRGR NQLLPRYWPR 240 ITDQELQQIS GDSNSTIVPL FEKMLSASDA GRIGRLVLPK ACAEAYFPPI SQPEGLPLRI 300 QDVKGKEWVF QFRFWPNNNS RMYVLEGVTP CIQSMQLQAG DTVTFSRMDP EGKLIMGFRK 360 ASNSVAMQDT HLTAIHNGAH SSETFFSGVF ENLPVISGYP GLLQSLKGSM DPHLNALSKH 420 LTTASGDISW HKSEKQEGRT REGMLLPSLL VPERKRTRNI GSKSKRLLID SQDALELKLT 480 WEEAQDLLRP PPAAKPSTIM IEDLEFEEYE EPPVFGKRSI FIVRSTGEHE QWAQCDSCSK 540 WRRLPVDVLL PSKWTCADNA WDQSRRSCSA PDELAPRELE SFLRLSKEFK KRRTVADNRP 600 TQEHESSGLD ALANAAILGD NAADPGTASV ATTTKHPRHR PGCSCIVCIQ PPSGKGKHKP 660 NCTCNVCNTV KRRFKTLMIN KKKRQSEREA EIAYRNQHAW GPRDEAEVDS TSRHVSSHVD 720 PSDNEARSAN ESDSKSQSKV AETGKGILDL NCHPGREGEL QAGPDHATSS TSHVPPQATN 780 ESEDQHNENQ CQEQESGGEE RPDQGQDDPL * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9a_A | 4e-70 | 239 | 368 | 2 | 131 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppe.5913 | 4e-67 | fruit |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor of gene expression involved in embryonic pathways, such as LEC1, ABI3, and FUS3. Repressor of the sugar-inducible genes involved in the seed maturation program in seedlings. Plays an essential role in regulating the transition from seed maturation to seedling growth. Functionally redundant with VAL1/HSI2. {ECO:0000269|PubMed:17158584, ECO:0000269|PubMed:17267611}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.6G293400.10.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020420751.1 | 0.0 | B3 domain-containing protein Os07g0679700 isoform X4 | ||||
Swissprot | Q5CCK4 | 0.0 | VAL2_ARATH; B3 domain-containing transcription repressor VAL2 | ||||
TrEMBL | A0A251NXC0 | 0.0 | A0A251NXC0_PRUPE; Uncharacterized protein | ||||
STRING | EMJ09561 | 0.0 | (Prunus persica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32010.1 | 0.0 | HSI2-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.6G293400.10.p |
Entrez Gene | 18772013 |
Publications ? help Back to Top | |||
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