PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.6G293400.1.p | ||||||||
Common Name | PRUPE_ppa001234mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | B3 | ||||||||
Protein Properties | Length: 907aa MW: 99704.3 Da PI: 6.9223 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 55.8 | 8.5e-18 | 326 | 425 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+k l+ sd+++ grlvlpk +ae++ ++++e+ l+++d +g++W +++++ +++s++yvl+ G ++ +L++gD+v+F++++ Prupe.6G293400.1.p 326 FEKMLSASDAGRIGRLVLPKACAEAYfpPISQPEGLPLRIQDVKGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRMD- 414 89**************************555567778***************9989999999***9.********************876. PP SEE..EEEEE- CS B3 88 sefelvvkvfr 98 e++l +++++ Prupe.6G293400.1.p 415 PEGKLIMGFRK 425 77777777766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 7.0E-29 | 318 | 428 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 9.55E-19 | 323 | 425 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.55E-21 | 324 | 425 | No hit | No description |
Pfam | PF02362 | 2.5E-15 | 326 | 425 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.138 | 326 | 427 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.8E-19 | 326 | 427 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS51050 | 14.286 | 591 | 641 | IPR011124 | Zinc finger, CW-type |
Pfam | PF07496 | 1.4E-12 | 596 | 638 | IPR011124 | Zinc finger, CW-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010030 | Biological Process | positive regulation of seed germination | ||||
GO:2000034 | Biological Process | regulation of seed maturation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 907 aa Download sequence Send to blast |
MEPRTCVNSA CGTSSSIEWK KGWALRSGGF ANLCPKCWSA YEQSIFCDIF HSKESGWREC 60 ILCGKRLHCG CIASMFLLDL LDGGGVKCIK CAKSSEPQPI LSDEKPDGLG ISKISELQPT 120 AQDNQLDGTN VEKLKLIQLG NNKDCNGFRN LLQFQNNDAN GLLQKMKHAD TPPPVGEIGG 180 TCLSNFNLAS NGSSEAPKAE VFKANLGIND IYDSLPQTNL SMSLGAPLGK ANPVPAAIFD 240 EREHSKTSSP LLPGARSRNL FPKPPKLALG AGLEENSTIA SHARVARPPA EGRGRNQLLP 300 RYWPRITDQE LQQISGDSNS TIVPLFEKML SASDAGRIGR LVLPKACAEA YFPPISQPEG 360 LPLRIQDVKG KEWVFQFRFW PNNNSRMYVL EGVTPCIQSM QLQAGDTVTF SRMDPEGKLI 420 MGFRKASNSV AMQDTHLTAI HNGAHSSETF FSGVFENLPV ISGYPGLLQS LKGSMDPHLN 480 ALSKHLTTAS GDISWHKSEK QEGRTREGML LPSLLVPERK RTRNIGSKSK RLLIDSQDAL 540 ELKLTWEEAQ DLLRPPPAAK PSTIMIEDLE FEEYEEPPVF GKRSIFIVRS TGEHEQWAQC 600 DSCSKWRRLP VDVLLPSKWT CADNAWDQSR RSCSAPDELA PRELESFLRL SKEFKKRRTV 660 ADNRPTQEHE SSGLDALANA AILGDNAADP GTASVATTTK HPRHRPGCSC IVCIQPPSGK 720 GKHKPNCTCN VCNTVKRRFK TLMINKKKRQ SEREAEIAYR NQHAWGPRDE AEVDSTSRHV 780 SSHVDPSDNE ARSANESDSK SQSKVAETGK GILDLNCHPG REGELQAGPD HVSMMSLVQV 840 ASLPLETYLK HNGLTSLMSE QQATSSTSHV PPQATNESED QHNENQCQEQ ESGGEERPDQ 900 GQDDPL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9a_A | 1e-69 | 304 | 433 | 2 | 131 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ppe.5913 | 4e-67 | fruit |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.6G293400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020420749.1 | 0.0 | B3 domain-containing transcription repressor VAL2 isoform X1 | ||||
Swissprot | Q6Z3U3 | 0.0 | Y7797_ORYSJ; B3 domain-containing protein Os07g0679700 | ||||
TrEMBL | A0A251NXC5 | 0.0 | A0A251NXC5_PRUPE; Uncharacterized protein | ||||
STRING | XP_008244859.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11018 | 32 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32010.1 | 0.0 | HSI2-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.6G293400.1.p |
Entrez Gene | 18772013 |
Publications ? help Back to Top | |||
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