PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Prupe.6G284400.1.p | ||||||||
Common Name | PRUPE_ppa022996mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 518aa MW: 58370.7 Da PI: 4.4771 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.3 | 4.4e-19 | 70 | 127 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpse.ng...krkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr++ +g+WvAeIr+p++ g k+ r +lg+f ta++Aa a+++a+++++g Prupe.6G284400.1.p 70 CVYRGVRQRT-WGKWVAEIREPNNfSGvskKNSRLWLGTFPTAYDAAFAYDEAARAMYG 127 68*****999.***********9988899566***********************9987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 4.8E-12 | 70 | 127 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.7E-29 | 71 | 136 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.049 | 71 | 135 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.49E-19 | 71 | 136 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.9E-33 | 71 | 141 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.19E-27 | 72 | 135 | No hit | No description |
PRINTS | PR00367 | 6.0E-9 | 72 | 83 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.0E-9 | 101 | 117 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 518 aa Download sequence Send to blast |
MTSEASDGDK KLPKRRNGCD SIEDTLAKWK NYNDRFDFAK DGVKKKRKAP SKGSKKGCMK 60 GKGGPENSDC VYRGVRQRTW GKWVAEIREP NNFSGVSKKN SRLWLGTFPT AYDAAFAYDE 120 AARAMYGGLA RLNFPQNTMK LKEYSNSVYS GTTKTTTSSS YESSTTYNNG DEAEGLDMSS 180 KCAMESSRFV VGKSKESYDF FEDCVHKEPK QETDCSVGFA SQDLEVLDAT LREAKDVKCE 240 LETEYELARN DAEETSVFQT GSYESFNHRP DYLHNELQVV NLDSVPDGKP YYNDWESLET 300 FLRSNNDYLN NELVDAECNG RNDCNPSEDV NVEKPVTSEA MEKEFPMILE SGSHNGLDDS 360 CHYMHNEQTN VASNLVTADF EPSNDEIKRS MTDQELRGGL VETTNLNGHN GFIDSYACLD 420 DIRPSNDIKM QENRLANLHN WSVEESYGID AQNQQGERLP NLPNQSQTQP QGNIPGRLAH 480 TEEASLDIDF DVDLFRQNYD SGVLEEQVFH GSWFPYS* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 7e-18 | 72 | 135 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Prupe.6G284400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_007208591.2 | 0.0 | uncharacterized protein LOC18773985 | ||||
TrEMBL | A0A251NWY2 | 0.0 | A0A251NWY2_PRUPE; Uncharacterized protein | ||||
STRING | EMJ09790 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF22209 | 4 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G11020.1 | 1e-24 | DRE/CRT-binding protein 2B |
Link Out ? help Back to Top | |
---|---|
Phytozome | Prupe.6G284400.1.p |
Entrez Gene | 18773985 |