PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Prupe.6G267600.1.p

Common Name

PRUPE_ppa006851mg

Organism

Prunus persica

Taxonomic ID

3760

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

MYB

Protein Properties

Length: 398aa MW: 43604.4 Da PI: 4.9633

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Prupe.6G267600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.5	2.7e-17	51	96	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd +l ++v ++G ++W++Iar + gR++k+c++rw + Prupe.6G267600.1.p 51 KGPWSPEEDSILSRLVSKFGARNWSLIARGID-GRSGKSCRLRWCNQ 96 79****************************.*********985 PP
2	Myb_DNA-binding	56.1	8.7e-18	103	147	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r+++T eEd+ ++ a++ +G++ W++Iar ++ gRt++ +k++w++ Prupe.6G267600.1.p 103 RKPFTDEEDQMIIAAHAFHGNK-WAAIARLLP-GRTDNAIKNHWNST 147 789*****************.*****.*********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	19.988	46	97	IPR017930	Myb domain
SuperFamily	SSF46689	1.91E-30	48	144	IPR009057	Homeodomain-like
SMART	SM00717	1.0E-14	50	99	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	5.8E-26	52	104	IPR009057	Homeodomain-like
CDD	cd00167	3.60E-14	53	95	No hit	No description
Pfam	PF13921	8.3E-17	54	113	No hit	No description
PROSITE profile	PS51294	26.389	98	152	IPR017930	Myb domain
SMART	SM00717	5.3E-17	102	150	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.0E-24	105	151	IPR009057	Homeodomain-like
CDD	cd00167	8.64E-13	105	148	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009751	Biological Process	response to salicylic acid
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 398 aa Download sequence Send to blast
MEREMETAYD AAPAAVEVDA EDGGDSGEEA TQAVAGGGGE SHRKSGRDRV KGPWSPEEDS 60 ILSRLVSKFG ARNWSLIARG IDGRSGKSCR LRWCNQLDPS VKRKPFTDEE DQMIIAAHAF 120 HGNKWAAIAR LLPGRTDNAI KNHWNSTLRR RCMDPDKIKL ESGNTVEDVS LDKTKASSEE 180 TFSYGDVNSS KSMEGREVSS LEHMDCQYED KGSTEGQFSH EVKEQPTVCR PAACISAFSV 240 YNHSDSQETG VSFPRLIPVQ GPLVQVSKLD VNISKLLDGV YGERSIPDQC GHGCCCANGM 300 NAQNSLLGPE FVDFSEPPSF PSFELAAIAT DISNLAWIKS GLENSSVRAM GDAADRTVPH 360 ESQGQMGHFE ESRMNNLFRF EERNDRLMGM KTNVLST*

Sequence ? help Back to Top

Protein Sequence Length: 398 aa Download sequence Send to blast

MEREMETAYD AAPAAVEVDA EDGGDSGEEA TQAVAGGGGE SHRKSGRDRV KGPWSPEEDS  60
ILSRLVSKFG ARNWSLIARG IDGRSGKSCR LRWCNQLDPS VKRKPFTDEE DQMIIAAHAF  120
HGNKWAAIAR LLPGRTDNAI KNHWNSTLRR RCMDPDKIKL ESGNTVEDVS LDKTKASSEE  180
TFSYGDVNSS KSMEGREVSS LEHMDCQYED KGSTEGQFSH EVKEQPTVCR PAACISAFSV  240
YNHSDSQETG VSFPRLIPVQ GPLVQVSKLD VNISKLLDGV YGERSIPDQC GHGCCCANGM  300
NAQNSLLGPE FVDFSEPPSF PSFELAAIAT DISNLAWIKS GLENSSVRAM GDAADRTVPH  360
ESQGQMGHFE ESRMNNLFRF EERNDRLMGM KTNVLST*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	9e-40	48	151	4	107	B-MYB
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00337	DAP	Transfer from AT3G09230	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Prupe.6G267600.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Slightly induced by salicylic acid. {ECO:0000269\|PubMed:16463103}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007205315.2	0.0	transcription factor MYB1
Swissprot	Q42575	1e-106	MYB1_ARATH; Transcription factor MYB1
TrEMBL	A0A251NZR1	0.0	A0A251NZR1_PRUPE; Uncharacterized protein
STRING	EMJ06514	0.0	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3986	33	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G09230.1	1e-108	myb domain protein 1

Link Out ? help Back to Top
Phytozome	Prupe.6G267600.1.p
Entrez Gene	18772814

Publications ? help Back to Top
Wang T, et al. Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1027-41 [PMID:26243618] Nguyen HT, et al. A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2. Plant Cell Physiol., 2016. 57(4): p. 784-97 [PMID:26872838] Sanz-Fernández M, et al. Screening Arabidopsis mutants in genes useful for phytoremediation. J. Hazard. Mater., 2017. 335: p. 143-151 [PMID:28441590] Verma N,Burma PK Regulation of tapetum-specific A9 promoter by transcription factors AtMYB80, AtMYB1 and AtMYB4 in Arabidopsis thaliana and Nicotiana tabacum. Plant J., 2017. 92(3): p. 481-494 [PMID:28849604]